Pseudomonas parafulva CRS01-1, NJ69_RS13200 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000175 3'-5'-exoribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11046
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppv03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 7 186 5.2E-24
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 1 475 0.0
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 3 194 1.5E-64
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 207 345 4.9E-47
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 205 467 7.0E-89
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 352 412 9.8E-25
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 4 196 0.0078
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 3 194 2.0E-92
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 351 412 1.4E-23
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 207 345 4.9E-44
CDD cd06138 ExoI_N - - 6 188 1.05063E-108
Gene3D G3DSA:1.10.287.1240 - - - 413 472 4.4E-5
PANTHER PTHR11046 OLIGORIBONUCLEASE, MITOCHONDRIAL IPR022894 Oligoribonuclease 3 422 2.6E-10
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 4 447 8.22E-117

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.