Pseudomonas parafulva CRS01-1, NJ69_RS09200
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGCAGGCCGAGGCCGCCAGCCTCTGCGTGCGCGAGCAGACTCAAGGCTGCCTGGTGTCGGTCAGCCGGGGGCGGGTGAGCCTGCAACCGCTGGCCGGA CCGAGGCTGCAGCTGCAGGCCGGGCAACGGGCGACCCTTGCGCCTGCCGCCGTGACCGGCGTGCAAGCATTCGATGCGCAACTGCCCGGCTGGCAACAGG GCCTGCTGATCGTCGACGACCGGCCGCTGGGGGAACTGCTGCGTGAACTGGACCGCTATCGCCCAGGGGTGTTGCGTTGGGACTCGGCCGTGGAACGCCT GCCGGTGACCGGCACCTTCCAGCTCGACGACACCGACCGCATCCTCGCACTGTTGGCCGCGAGCCTGCCTGTTCAGGTGCATTACCGTACCCGCTACTGG GTCTCGCTGACGCCAGGCAAGAAAATCGCCTGAGCGCTGTCCCCTTTTACTCACTCGCTTGTCATCACGGGTATCCACCCCTGAGCAGAGAACCTTGCGG
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| DNA Sequence for Gene |
>NJ69_RS09200
ATGTCCCGTTCCCCCTCGTTACGCCCTTTGTCCACGCAGTTGCTGCGTGCCGGTCTGCTGCTTGCGCTGGGGCTGCCTGCCAGTGCCTGGGCGGAGGAAT CGCCACGGCGCAGCTTCCAGGTCGGCGGCGGCAGTCTCGGCGCAGTGCTGACCCGTTTTGCCGGTCAAGCCGGCGTCAGCCTGTCGGTCGACCCTGCACT GGTAGCCGGACGCAGCAGCTTGGGCCTTGAGGGCGAGTACGCTGTGGAAGAGGGCTTTGCCGCCTTGTTGCGCGGCTCCGGGCTGACGCTGGTGCCGGCC GGTCCAGGCAGCTATACCCTGGTACATCAGATCGAGCCGGTCGAGGGTGTGCAGGTACTGCCCGAGACCACCGTGCACGGCCAGGGACTGGGCATGGTCG ACGACAGCTACGCCGGCGGCCAGGTGTCGCGGCGCAGCACCTTGGGCATGCTGGGCGAGCGCGACTACATGGAGACGCCGCTGAGCGTCACCTCCTACAC CAGCGAACTGCTGCAGAACCAACAGGCCCGCACCCTGGCCGACGCCGTGGCCAACGACCCTTCGGTGCGCAGCACCAACCCGGCCGGCGGGCGTTTCGAG CAATTCTCCGTGCGCGGCTTCAGCCTCTACAACAGCGATGTCGCTTACGGCGGTTTGTATGGCGTGCTGCCGACCTATTCGATCGACATGGAAATGATCG AGCGGGTCGATATCCTCAAAGGCCCTGGCGCGCTGCTCGGCGGTCTGGCGCCCAACGGCAGCATCGGTGGCGGGGTCAACATCGAGCCCAAGCGCGCGGG CGACACCCCGCTGACCGAGTTCACCGCGTTGTACGCAAGCCCAGGGCAGGGCGGCGGGCACCTGGACATCGGGCGTCGTTTCGGCGAAGGACAGCGCTTC GGCGTGCGCCTGAACGCGCTGCGACAGGCCGGCGACACTGAATGGGATCACCAGCGCATCGAGCGTGAGGCCACGGTGCTGGGCGTGGACATGCAGGGCG ATCGCACGCGGCTGTCCCTGGACCTCGGCCATCAGCAGCGCGATGTAGATGCACCGATGGAGCGCGTAGGCTTGGCCGCCGGGCTCAAGGTGCCGGATGC CAAGGACGTGCACCACAACTTCGCCCAGCCATGGAGCTATTCGCGGGCCAAGGACACCTTCGGCGTGGTGCGCGGCGAATATGACCTGAGCGACAACTGG ATGCTGCATGGCGCCCTCGGCGCCCGCAAAGGCGACTACGATTTCATGCGCCACGCCGTGCAGGTGGTCAATTCGGCCGGGCGTTTCACCGTCAGTCCGC GCGCCTTCCAACGTGAAGAGGACGTGGTCACCGGCACTGTCGGCGTGCGCGGCTGGTTCGACACCGGGCCGGTCGGCCACACGCTGAATGTCAGCCTCAA CCGTTTCGACCTGACCTTCGACAACAACGGCGCGCGCTATGCCAGCGGCATCAGCAACCTGTACCAGCCGGTCGCCTTGCCCGAGCCCGGCGCGCCGCTG GCGCTGGACAGTCCGGTGCACACCCACACCGTGCTGTCGAGCCTGGCCCTGGCCGACACCCTCAGTTTTGTCGACGACACCGTATTGCTGACCCTGGGCG CACGCTTGCAGCGTGTGGAGGTGGACAGTTCCGAACCCGGCGAGCCCGACCAGCGCTACGACGAGCACGCGACTTCGCCGGCGGTAGGCCTGGTATGGCG CAGCACGGATCAGCTATCGCTGTACTTCAACTACATGGAAGGCTTGACCCAGGGCCAGACGGCCCCGGAGACGGCGAACAACGCGGGTAAAGTGTTCGCA CCTTATCGCAGCAAGCAATTGGAGGTGGGCGCCAAGTACGACATGGGGCGTTTCAGTACTACTGTCAGCCTGTTCCGCATCGACAAGCCGTCGTACTACA CCGATGCGCAGAACAACCTCAGCGCCGACGGTGAGCAGCGCAACCAGGGCCTGGAGATCAGCCTGTTCGGCGAGCCGCTGGAGCGTGTGCGTGTGCTGGG TGGCGCGATGTTCCTCGACGCCGAGCAGACCCGTACCGCCAACGGCCGCAACGATGGCAACCGGGCCATCGGCGCGCCGGTGGTCAACGCCAACCTGGGT GTGGAATGGGACCTGCCCGCTGTCGATGGTCTGACCCTCAGTGCCCGGGTGATCCATACCGGAAATCAGTACCTGGATGCCGCCAACCGGCAGAAAATCG ATGCCTGGCAGCGCTACGACCTGGGCGCGCGCTACGCCCTCAAGCTGGGCGACAAAGACCTCACGCTGCGCGCCAGCATCGAGAACATACTGGACAAGAC CTACTGGGCTTCGGCCAACGTGCCCGATGGCACCGCCACCGGCCTGACCCTGTCGGCACCGCGCACCTGGCTGCTGTCGGCGACGATGGGCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGGGTAGGGCTTCTCGCCGAAGTCGGTCAGACCTGTCTCTGTGGCGCCGAGTACCGCACCGCGCGGCCCTCGGCGCCTATGCTTGGGCCTTCATGCGC ACTGAGAGGAGACTTGCGATGGACGCACGCCACATGCTGATGGGGGTTGCCTTGGGCCTGAGCGCGCTGGTGCAGGCCGAGGATGGCCCCGCCTCGCACA TCAGCGTCAAGGTCGGCAAACCGACTTTCGTTCACCAGCTCAGGTACGAGGTGATGTACAGCGAGAAGCCCTTCGAGCTGGCGACCATCTATTACTACGA CAATGGCGTCTACAAGATCGTCTCGCCCGGCGAGGATCATTACGGCGTGTACCTGGTCATGGGCTCGATGACCGAACCTTCCTATGCCATCAGCTACCTG TCCCTGCCCTCGGACGACTGGGGTGGCAACGTGGCGCGGCATGACCTGCGGTTCGATGCGCGGCGCCAGGTGTTCGAGCAGCAGGCGCTGAGCTTCCAGG
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| Amino Acid Sequence |
>TonB-dependent receptor
MSRSPSLRPLSTQLLRAGLLLALGLPASAWAEESPRRSFQVGGGSLGAVLTRFAGQAGVSLSVDPALVAGRSSLGLEGEYAVEEGFAALLRGSGLTLVPA GPGSYTLVHQIEPVEGVQVLPETTVHGQGLGMVDDSYAGGQVSRRSTLGMLGERDYMETPLSVTSYTSELLQNQQARTLADAVANDPSVRSTNPAGGRFE QFSVRGFSLYNSDVAYGGLYGVLPTYSIDMEMIERVDILKGPGALLGGLAPNGSIGGGVNIEPKRAGDTPLTEFTALYASPGQGGGHLDIGRRFGEGQRF GVRLNALRQAGDTEWDHQRIEREATVLGVDMQGDRTRLSLDLGHQQRDVDAPMERVGLAAGLKVPDAKDVHHNFAQPWSYSRAKDTFGVVRGEYDLSDNW MLHGALGARKGDYDFMRHAVQVVNSAGRFTVSPRAFQREEDVVTGTVGVRGWFDTGPVGHTLNVSLNRFDLTFDNNGARYASGISNLYQPVALPEPGAPL ALDSPVHTHTVLSSLALADTLSFVDDTVLLTLGARLQRVEVDSSEPGEPDQRYDEHATSPAVGLVWRSTDQLSLYFNYMEGLTQGQTAPETANNAGKVFA PYRSKQLEVGAKYDMGRFSTTVSLFRIDKPSYYTDAQNNLSADGEQRNQGLEISLFGEPLERVRVLGGAMFLDAEQTRTANGRNDGNRAIGAPVVNANLG VEWDLPAVDGLTLSARVIHTGNQYLDAANRQKIDAWQRYDLGARYALKLGDKDLTLRASIENILDKTYWASANVPDGTATGLTLSAPRTWLLSATMGF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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