Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CATGCTCAAGTGCCAGGAACGCAGCACCTTCATTCCCGTGCTGGCCAACAGCTTCGCCCGCCACACCTGCGAAATCCACGTCGCCCATGCCGAGCGTGAG CATGGCGAGTCAAAGTACAGCCCGATGGGCCTGCTCAACCTCATGTTCGATCTGCTCACCTGCATGACCAACATGCCCCTGCGCCTGTTGAGTCTGTGCG GTGCAGCCATGGCCAGTGCTGGCTTCGTGCTGGCCTGCGCGCTGGTGCTGCTGCGCCTGACATTTGGCGCGGCCTGGGCCGGTAACGGTCTGTTCGTGTT GTTCGCCGTGTTGTTCATGTTCAGCGGCGTCCAGTTGCTGGGCATGGGGCTGCTGGGCGAATACCTGGGCCGCCTGTACAGCGACGTCAGGGCGCGCCCG CGATTTCTGATCGAGCACGTTATCAGAGCCTGTCCTGCTTCGCGCCCGGTACCGCCGGAGCCTGCCAATCCGCTTCCTTCTGCCAGGGAATCCTGACGAC
|
|
DNA Sequence for Gene |
>NJ69_RS08685
ATGAACGTCAAAACCGTTGTCTTTGCCTATCACGATATCGGTTGCACCGGCATCGAATCACTTCTCGAGGCCGGCTACGATATTTGCGCGGTCTTCACCC ACATCGATCAGCCTCAGGAACGGATCTTCTTCGGCTCCGTAGCGCGTCTGTGCGCTGAGCGTGGCATCCCGGTTTACGCCCCCGAAGACGTCAATCATCC CCTGTGGGTGCAGCGCATTCGCGAGCTCGAGCCGGACTTCCTGTTTTCCTTCTATTACCGCCAGCTCTTGGGCGAGTGTATCCTCGCCTGCGCCAAGCGC GGCGCATTCAACCTGCACGGGTCCCTGCTGCCACGCTACCGAGGCAGAGCCCCAGCGAACTGGGCCATCATCAACGGCGAGACGCAGACCGGCGTCACCC TGCACCGAATGGTCGGACGCGCCGATGCCGGACCGATCCTTGCTCAAGTTCCGGTAGCCATCGCCGAGACCGATACTGGTCTGAGGCTTCAACAGAAACT GCGCGCAGCAACCATTGGCTTGCTGCGCGAAAAGCTACCACTACTGGCGGCCGGTGGTCTCTCAGAGGTGCGGCAGGATGAAGCCCAGGCCAGCTACTAC GGCCGCCGTACGGCCGCCGATGGCCTGATCGACTGGCAGCACCCGGCCAAACGACTCTACGACCTGATCCGCGCGTTGACCCATCCCTACCCTAGCGCCT ATTGCCAGACCAGTGAGCACAAGTTGTTGATCTGGGACGCCGATGTCATCCTGGGCAACCTCGGTCAGCCGCCTGGCACGGTGCTGTGCGCCGATCCGTT GCGCATCGCCTGCGGGGAAGATTCGCTGGTGGTGCGCCATGCACAGCGCGGCGACCATGGTCTGTATCTCTGCGGTGCGGGCTTGGCCCGTGAGCTGGGC CTTGTGGAGGGAGCGTCGCTGAACGCGGCGCACCCGCCTGCAAAACGCCCGACGCGGGTGCTGATCCTCGGCGTCAATGGCTTCATCGGCAATCACCTGT CCGAGCGACTGTTGAGTGACGGCAACTACGAAATCCATGGCATGGACATTGGCTCGGATGCCATCGAACGGTTGAAGGACAATCCACAGTTCCACTTCGT CGAGGGCGACATCAGCATCCACAGCGAATGGATCGAATACCACGTCAAGAAATGCGACGTCGTACTGCCGCTGGTCGCCATCGCCACCCCCATCGAGTAC ACCCGCAACCCGTTGCGCGTCTTCGAACTGGACTTCGAAGAAAACCTCAAGATCATCCGCTACTGCGTGAAGTACGGAAAACGCGTGATATTCCCTTCCA CTTCGGAAGTCTATGGCATGTGCCAGGATCCGGAGTTCGACGAGGACAGGTCGAACCTGGTCGTAGGCCCCATCAACAAACAGCGCTGGATCTACTCGGT TTCCAAGCAACTGCTGGACCGAGTCATCTGGGCCTACGGGAAGCAAGGTCTGCGTTTTACTTTGTTCCGTCCGTTCAACTGGGTAGGCCCGCGCCTGGAT CGCCTGGACTCGGCGCGCATTGGCAGCTCGCGAGCGATCACCCAGCTGATCCTGCACCTGGTGGAAGGCACCCCCATACGCCTGGTCGACGGTGGCGAAC AGAAGCGCTGCTTCACCGATGTCGCCGACGGCATCGAAGCGCTGGCGCGCATTATCGACAACGAAGGAAGTTGTTGCGATGGGCAGATCATCAATATAGG CAACCCCGAGAACGAGGCGAGCATCCGCGAGTTGGGCGAAGCCTTGCTGCGTCAGTTCGATGCGCACCCGCTACGCGGCGAGTTCCCGCCCTTTGCCGGG TTTCAGTTGGTGGAGAACCGCACGTTCTACGGCGACGGCTACCAGGATGTCAGCCACCGCAAACCGCGCATCGCCAATGCACGGCGCTTGCTGCACTGGC AGCCGACCGTCGATCTGGAACAGACCATCGCCAAGACCCTGGACTTTTTCCTCAACGAAGCGCTCCGCGAGCGCGGGAGAGGCCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GTCGGGTGGGATTGCGGATCGATGTGGACACCTTTACCGGCACGCGTGAAGGCGTGCCCGCGCTGCTCGATCTGCTCGACGCCGCTGCGGTCAAGGCCAC CTTCTTTTTCAGCGTGGGCCCCGACAACATGGGGCGTCACCTCTGGCGACTGGCCCGCCCGGCATTCCTGCACAAGATGCTGCGCTCGAAGGCCGCCAGC CTTTATGGATGGGACGTGCTCCTGGCCGGCACGGCATGGCCTGGAAAGTCGATAGGCAACAAATTGGCACCGATCATGCGGCGCGCCCAGGAGGCGGGTC ATGAGATCGGCTTGCACGCCTGGGATCACTACGCCTGGCAAGCCCACGCCGGCCGATGGCCGGATCACGTTCTGGTCGATCAGGTGCGTCAGGGCAAGGA ATGCCTCGAAGACATCATTGGCCAATCGGTGACCTGTTCGGCAGCACCCGGCTGGCGGGCTGACACCCCTATCCTTTCGGCCAAGCAGGCGCTCGATTTT
|
|
Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MNVKTVVFAYHDIGCTGIESLLEAGYDICAVFTHIDQPQERIFFGSVARLCAERGIPVYAPEDVNHPLWVQRIRELEPDFLFSFYYRQLLGECILACAKR GAFNLHGSLLPRYRGRAPANWAIINGETQTGVTLHRMVGRADAGPILAQVPVAIAETDTGLRLQQKLRAATIGLLREKLPLLAAGGLSEVRQDEAQASYY GRRTAADGLIDWQHPAKRLYDLIRALTHPYPSAYCQTSEHKLLIWDADVILGNLGQPPGTVLCADPLRIACGEDSLVVRHAQRGDHGLYLCGAGLARELG LVEGASLNAAHPPAKRPTRVLILGVNGFIGNHLSERLLSDGNYEIHGMDIGSDAIERLKDNPQFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEY TRNPLRVFELDFEENLKIIRYCVKYGKRVIFPSTSEVYGMCQDPEFDEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYGKQGLRFTLFRPFNWVGPRLD RLDSARIGSSRAITQLILHLVEGTPIRLVDGGEQKRCFTDVADGIEALARIIDNEGSCCDGQIINIGNPENEASIRELGEALLRQFDAHPLRGEFPPFAG FQLVENRTFYGDGYQDVSHRKPRIANARRLLHWQPTVDLEQTIAKTLDFFLNEALRERGRGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|