Pseudomonas parafulva CRS01-1, NJ69_RS05075
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCACCAATCGCGACCTACCGCTGGCACTGGCAGTGGATGATATCAATGTAACCTCCGAGGTCACGCCTCCACTTGCCAGCTACAGCAACATCTGTGCCC CTACGCGCCCCTATCGGCCGGTGTTGGACGGCCAACTGCAGTGGGTCCTGATTTCCAACATGTCACTCAACTATCTGTCGTTGCTTTCGGCTGAAGCGCT CAAAGCGATCATTCGGGCCTACGACTTCGCGGCGTTGCACGATATCCAGCAGACACGCACCACCCGCAAACGCCTCGATGGCATCCAGGATGTTCAAACA GAGCCATTGGACTGGCTGATCAAAGGACAGCCCGTTCGTGGCCTGCGGACACGATTGAAGCTGGATCAGACGGCGTTCCTCTGCGAAGGCGACCTCTACC TATTCGGTTGCGTGCTCGCACACTTCTTCGCCCTCTACGCCAGCATCAATTCCTTCCATCAACTGGAAGTGATCAACATCACCAATAATGAGCATTACAC
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| DNA Sequence for Gene |
>NJ69_RS05075
ATGGCCAATCCAGACCGGCAAGCAACCGCTGATCTAGCCGACACGTTGCTCGCCGAGGCACATCAGTACAACTTCTTCCAGTTGCTGGAGCGCCTGCACG GCTTGCACGAGGATGATCTGGAACCGCGTTGGCCAGATAGAGCCACCCGCCTGCGTGTACGGCTTGGCTGCGACCCGCGGCTGACCTTTCCCATTTCGGA CGTGTACAAAGCGGAACGCATGCCTGCGGCGCAAGACCGGTACCGCATCTGCACCACGTTCATGGGCTTGCATGGCACGGACTCCCCGTTGCCGTCCTAC TACCTGGAGCAGGTGGCGTATGAGCATGCGCAGGGTATCGGTGTGCGTCCGGCCTTCTTCGATTTCTTCAATCACTACCTGCTCAGTCTGTTACACCGCA TCTGGCGCAAGTACCGCTACTACATTCGTTTCCAGCCGGGTGCCAGCGATGGCTTCTCCCAATATATCTTCGCCCTGCTTGGATTGAATGACAAAAAGCT GCGCGGCGACACGGCACTGCCTTGGAGTCGACTGCTCAGTTTTGCCGGCGTGATCGCCAGTCGCAGCCGTTCGCCAGGCACCGTCGCCGGCATCATTGCC CACTGCTTCGACCTCAAGCAGGTACAGATTCGAGAGTTCGAAACCGGCTCGGTTTACACCACGACCCAGCAACGGGTAAGCCTGGGTTGCAGCAATGGCA ATCTGGGCAGTTCCTTCACGATCGGCAGCCGCACACGAACTCGCAGCAGCAAGTTCACCATAGTGATCAGTGAACTCGATCAGGATCAATTGCGCGAACT GTTGCCCAGTGGCATCAACTTCAATCGCCTGCGTGCATTGATCGACTTTCTGCTACGCGATGGCCTGGCCTACGACCTGGAGCTGCGCCTCAAGCAGAAC GCCCTACTGCCCTTTCGCCTGCACAACAGCCAGGGCGCCTACCTGGGCTGGACCAGTTTCGTTGATGACCGCAACGGTCAGATCGCCCCGGTTGTACGGT TCCGGGGGCGCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCCTTGACCTTGAGCATCACCAACCTTGAACAACTGCGGCATAACGTCACTGCCCGACATCAGTTCGATTGCTCCGGCGGCACTATTGGCAGCGCAGG GGCTACCTGGCGGATTGATGATCGTGAAGGAAACGTTGCGCCGATTCACTGCGAGATTCGCTGGTTCGAGGGCAGTTTCTGTGTAATCGATCGCTGCCAA CGCACCTATCTGAATGACAGCCTTGAGAGTGTGGGATCGCTCACCGCCAGACGGCTGTTAGAAGGTGACCAACTGCGCATTGGCGCTTGCCTGCTGCAAG CTCAAGTTTCACAAGCGGATGTGCGCTCGCTGGAAGACCTGTTTAGCCCTGACCAGAGAACCCTTGATCAATGGCTACTCGATGTACCCGCCCAAGCGTG GGAGCCCGTATCTGTCACCCGTGACGCTGCGGTTGAAATCTGTGCCGCCTTCGAATCGAACATGGGTAAAGACCCCTTGGTCGCTCTAGACACTGTGGCA
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| Amino Acid Sequence |
>type VI secretion protein
MANPDRQATADLADTLLAEAHQYNFFQLLERLHGLHEDDLEPRWPDRATRLRVRLGCDPRLTFPISDVYKAERMPAAQDRYRICTTFMGLHGTDSPLPSY YLEQVAYEHAQGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGASDGFSQYIFALLGLNDKKLRGDTALPWSRLLSFAGVIASRSRSPGTVAGIIA HCFDLKQVQIREFETGSVYTTTQQRVSLGCSNGNLGSSFTIGSRTRTRSSKFTIVISELDQDQLRELLPSGINFNRLRALIDFLLRDGLAYDLELRLKQN ALLPFRLHNSQGAYLGWTSFVDDRNGQIAPVVRFRGRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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