Pseudomonas parafulva CRS01-1, NJ69_RS03420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAGTAATTGCACAACGGTGCAGGAGCGGCGCGAGGTCGCTCCTGCACAGGCATGGCCCGTGATTATCCTGCCTTGCGCTCCGCTTCCTTCAACTCCTG AATCCGCTTGTCGATCAGCTGGCATTTGTCCGGCAGGTCTTTGCTCGCCGTGCCCAACTCCATGCCTTGGAGTTCTTCGTTGATTTCCTTGGCCTTCTGC GGGTTCTGCTCGGTCAGTTGCGTCACCAGCCCTGCCAGTTCCTCTCGTTTTTGCGTCGCCTCGTCGGGCGTGCACGCCCAGGCGGGCAGGGCGCAGGACA GGCTGGCGAACAGGGTCATGCGGCACAGAACGTTCATCGTCGTTTCCTCCTTGTGCAGTCACAGGGTGGAGTAGCGCCCGGCGGCAAAGGTTCAGGTCAA TGACCCAGAGGGCTTGGTAGTACAGCTGATGGCAAATTGACGTCAAAAAGCCATGAGGTTATGCTTCGCCCCCCGTTTTTTACCGTCCAGGGACTGGAAC
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| DNA Sequence for Gene |
>NJ69_RS03420
ATGGCGACATGGTTTCGCACGCGTGCCGCTCACGCGCTCCTGCTGCTGACTGTTGGTTTCTCCGGCGCCGACGCCCTGGCCGCCACGCCGCTGGAGCAAG ACCTCATTCGCGATCGTCAGGACCGCCTGCTGCAAGAACAGCAGCGGCGCCTCGATGAGCTGCGCGACCTGCCTGGTAACACGCCGGCGCCCAGCACCCA GCCGCTGCCCGAAGACACCCGCTGCTTCACCATCCGCACCCTCGAAATCAAGGGGGCCGACAGCCTCAGCGCCGCCGACCGCGAGCGTCTGACCAAGCCC TTCATCGGCCAGTGCCTGGGCGTCAGTCAACTCAATGTCCTGCTCAAGGCCATCACCGACCTGTACCTGGACCGTGGCTTGGTCACCAGCCGCGCTTATC TGCCGCAGCAGGACCTGTCCAGCGGTCACCTGCAGGTGCTGGTGGTCGAAGGGCGTGTGCAAGGTCTGCGGGCTGACCCGGCCAGCGGTCTGTCGCCGCG TGAGATCGCCATGGCCTTCCCCGGCCGTGAAGGCGAGGTGCTCAACCTGCGCGAGATCGAGCAGATGGTCGACCAGCTCAATCGCCTGCCTTCGACCCGT GCGCAAATGGAGCTGCTGCCCGGTGACGCCGTCGGCGCCAGTGTGGTGCAGGTCAAAGGCCAGCCCGACAAGCCCTGGCGCGCCTCACTGTCGCGCAACA ACGAAGGCCAGCGCAGCACCGGCGAGCAGCAGGTCAACCTGGGTTTCGAATGGGACAGCCCCCTGGGCCTGGCCGACCAACTGAGCCTGCGCGGCGGTCA CGATGTGGTCAGCGACCACACGCAAGGGTCGAAGAACGGTACGCTGGCGTACAACCTGCCCTGGGGGTGGTGGAACTTCAGCTACAGCTACAGCGAGTCC GATTACCGCTCCGAAGCCCAGGCCAACGGCTTCACGTTCAAGCAGACCGGAGACAGCCAGAACCACCAACTGCGCGCCGACCGTGTGCTGCACCGCGATG CCACCAGCAAGACCTCGGTGAACGTCGGCCTGGCGCACCTGCGCACCAACAACTACATCGAAGACAGCCGCCTGCAAGCCAGCAGCAACCGCCTCAGCGA AGCGCAGTTCGGCATCAACCACGGCCGGCGTATCGGCACCGCCTTCGTCAACCTTGACCTTGGCACTCAGTCGGGCATCGGCGCCTTCGACGCCCAGAGT AACGGCCATCCCCAGCCCGGCGAGCCAGTGGCGCGCTACCGCAAGTACACCGCCACGCTGAGCTACGTGCAAGGCTTCCAGGTGCTTGGCGAGAACCTGT CCTTCTCCAGCCTGGCCACCGCCCAGCGCAGCGAGGACGTGCTGTTCAGCCCGCAGCGCATCAGCCTCGGCGGGCTGTCGTCGGTGCGTGGCTTGAAGGA TCAATCGCTGTCCGGGGACAGCGGCGCCTACTGGCGCAACGACCTGCGCTGGACCCGACCGGTGACCTGGCCGGTGTTGCAGCCGGCGATCGCCGAGTAC GGGATGGGCCTGGGCTATGACCTGGGCGTGATCCGCAACGACCGCTACAACGGCGACCGTCACGGCCGCGCCAGTAGCCACTCGCTGGAGTTGTTCGCCC GGGGCCGGCACCTGGCTGCCAGCGTCACTTTCGCCCAGAGCCTGGAGCGCCCGGACGCCGTGCCCGACAAAGAGCGTCCGGTCTACTTCCGGCTCGACTT CTTCATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGTCGAGTCGTACGCCTTGTCCATTCTTCGTGAAAGGGCCATCGCCTGGGGACGTGTGCCTCGGGGATTCGAGATATGGAGGGGCTGCCCTGAGCAGTG CTGCGTCTTTGCGACCTGCGCCGAAGGTGGCGAAGATCGCGCTGTGCTGAGGTGTTTCAAGCTTGGGGGGTGATGGCACGGCAGCCAGTCAGCACGCCCG CTGTGACCGACTCCAGAAGCCCACCGGTACGTGATCCACCAGCCACACACCATTGTCCGCTTGATAGAACCTCGCGCCAGCGTCGCGCATCTTCGCCGTA TCGATCTCCAGCAACACGGGCTCCCCGTAGCGTTTGCCCACGCCCAGGGCAGTCTGCGGATCTTCGCTGAGGTGCACATGGTGACGTGTGCCCGCTAGCA GCCCCTGGCGTTCGATGGAGGCCATGAAGCGGCTCGCGGTGCCGTGATAGAGCAGGGCCGGAGGCGTTTTCTCGACATGCTGGACATCCACCTGATCGGT
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| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MATWFRTRAAHALLLLTVGFSGADALAATPLEQDLIRDRQDRLLQEQQRRLDELRDLPGNTPAPSTQPLPEDTRCFTIRTLEIKGADSLSAADRERLTKP FIGQCLGVSQLNVLLKAITDLYLDRGLVTSRAYLPQQDLSSGHLQVLVVEGRVQGLRADPASGLSPREIAMAFPGREGEVLNLREIEQMVDQLNRLPSTR AQMELLPGDAVGASVVQVKGQPDKPWRASLSRNNEGQRSTGEQQVNLGFEWDSPLGLADQLSLRGGHDVVSDHTQGSKNGTLAYNLPWGWWNFSYSYSES DYRSEAQANGFTFKQTGDSQNHQLRADRVLHRDATSKTSVNVGLAHLRTNNYIEDSRLQASSNRLSEAQFGINHGRRIGTAFVNLDLGTQSGIGAFDAQS NGHPQPGEPVARYRKYTATLSYVQGFQVLGENLSFSSLATAQRSEDVLFSPQRISLGGLSSVRGLKDQSLSGDSGAYWRNDLRWTRPVTWPVLQPAIAEY GMGLGYDLGVIRNDRYNGDRHGRASSHSLELFARGRHLAASVTFAQSLERPDAVPDKERPVYFRLDFFI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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