Pseudomonas parafulva CRS01-1, NJ69_RS02935

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001365
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppv01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppv00300 Lysine biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppv00261 Monobactam biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppv01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppv01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppv01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppv01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51569 Aldolase - - 2 289 3.35E-83
CDD cd00408 DHDPS-like - - 6 286 2.55514E-97
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 289 2.0E-83
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 104 120 7.7E-15
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 129 146 7.7E-15
PIRSF PIRSF001365 DHDPS IPR002220 DapA-like 1 296 2.9E-80
SMART SM01130 DHDPS_2 IPR002220 DapA-like 2 290 3.8E-90
PANTHER PTHR12128 DIHYDRODIPICOLINATE SYNTHASE IPR002220 DapA-like 2 291 1.2E-57
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 72 90 7.7E-15
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 36 57 7.7E-15
Pfam PF00701 Dihydrodipicolinate synthetase family IPR002220 DapA-like 3 288 1.1E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.