Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CGACTACGCCATCGAGGCGATCAAGGCCATTCTCGAAACCGACATCCCGGTCTTCGGTATCTGCCTCGGTCACCAACTGCTGGCCTTGGCCTCCGGTGCC AAGACCGTGAAGATGGGCCACGGTCACCACGGCGCCAACCACCCGGTCCAGGACCTGGACACCGGCGTGGTGATGATCACCAGTCAGAACCACGGTTTCG CCGTCGATGAAGCCACCTTGCCAGGCAATGTGCGCGCCATCCACAAGTCGCTGTTCGACGGTACCTTGCAGGGCATCGAACGCACCGACAAGAGCGCGTT CAGCTTCCAGGGCCACCCTGAAGCGAGCCCCGGCCCGACCGACGTCGCGCCACTGTTCGATCGTTTCATCGATGCCATGGCCAAGCGCCGCTGAGCATCC TGCATCGAGGCCCCGGACCGGCCTGTGCCGTGTCCGGAAGCGCCTGACCCAGATTGTTCAAGACGGCTTGCCGACTGACCCGCGGATTTGAGTGACAACC
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DNA Sequence for Gene |
>NJ69_RS00250
|carB
ATGCCAAAACGTACAGACATCAAAAGCATCCTGATTCTCGGCGCTGGCCCGATCGTGATCGGCCAGGCCTGTGAATTCGACTATTCCGGCGCCCAGGCTT GCAAAGCCCTGCGCGAGGAAGGTTTCCGCGTCATCCTGGTGAATTCCAACCCGGCCACCATCATGACCGACCCGGCCATGGCCGACGCCACCTACATCGA GCCGATAAAGTGGCAGTCGGTGGCCAAGATCATCGAGAAAGAACGTCCAGACGCGGTGCTTCCGACCATGGGCGGTCAGACCGCGCTGAACTGCGCCCTG GATCTGGAGCGCCATGGCGTTCTGGAGAAGTTCGGCGTAGAGATGATCGGCGCCAACGCCGACACCATCGACAAGGCCGAGGACCGTTCGCGCTTCGACA AGGCAATGAAGGACATCGGTCTGGAATGCCCGCGTTCGGGCATCGCCCATAGCATGGAAGAGGCCAATGCGGTCCTGGAAAAGCTGGGCTTCCCGTGCAT CATCCGTCCGTCCTTCACCATGGGTGGCACCGGTGGCGGCATCGCCTACAACCGTGAAGAGTTCGAGGAAATCTGCGCCCGTGGTCTGGACCTGTCGCCG ACCAAGGAACTGCTGATCGACGAGTCGCTGATCGGCTGGAAGGAATACGAGATGGAGGTGGTCCGCGACAAGAAGGACAACTGCATCATCGTCTGCTCCA TCGAAAACTTCGATCCGATGGGCGTACACACCGGCGACTCGATCACCGTCGCGCCGGCGCAGACGCTTACCGACAAGGAATACCAGATCATGCGCAACGC CTCGCTGGCGGTGCTGCGTGAGATCGGCGTCGAAACCGGCGGTTCCAACGTGCAGTTCGGCATCTGCCCGAACACCGGCCGTATGGTCGTGATCGAGATG AACCCACGGGTTTCTCGTTCCTCGGCCCTGGCCTCCAAGGCCACCGGCTTCCCGATCGCCAAGATCGCGGCCAAGTTGGCAGTCGGCTACACCCTCGATG AGCTGCAGAACGATATCACCGGCGGTCGCACCCCGGCGTCCTTCGAGCCTTCGATCGACTATGTCGTCACCAAGCTGCCCCGCTTCGCCTTCGAGAAGTT CCCCAAGGCCGACGCGCGCCTGACCACCCAGATGAAGTCCGTGGGTGAAGTCATGGCCATCGGTCGCACCTTCCAGGAATCCCTGCAGAAAGCCCTGCGC GGCCTGGAAGTTGGTGCCTGCGGTCTGGACCCGAAAGTGGATCTGGCCAGTTCCGAAGCGTCGAGCATTCTCAAGCGTGAGCTGACCGTGCCCGGTGCCG AGCGTATCTGGTATGTGGCCGATGCCCTGCGCGCCGGCATGAGCCGCGACGAAATCTTCGCCCTCACCGGCATCGACCACTGGTTCCTGGTGCAGCTCGA AGACCTGATCAAGGAAGAGGAGAAGGTCAAGACCCTCGGCCTGGCCGACATCGACAAGGCCCTGATGCTGCGCCTCAAGCGCAAGGGCTTCTCCGACCAG CGCCTGGCCAAGCTGCTGGGCGTGACCGACAAGAATCTGCGTCGTCACCGCCATAAGCTCGACGTGCTGCCGGTTTACAAGCGCGTCGACACGTGCGCCG CCGAATTCGCCACCGACACCGCCTACCTGTACTCCACGTACGAAGAAGAGTGCGAGGCCAATCCGTCGACCCGCGACAAGATCATGATCCTCGGGGGTGG CCCGAACCGTATCGGCCAAGGTATCGAGTTCGACTACTGCTGCGTGCACGCCGCTTTGGCGCTGCGTGAAGACGGGTACGAGACCATCATGGTCAACTGC AACCCTGAAACCGTCTCCACCGACTACGACACCTCGGATCGTCTGTACTTCGAACCGCTGACCCTGGAAGACGTGCTGGAAGTCTGCCGCGTCGAGAAGC CTAAAGGCGTCATCGTCCATTACGGTGGTCAGACTCCGCTGAAACTGGCCCGCGCCCTTGAAGAGGCAGGCGTACCGATCATCGGCACCAGCCCGGACGC CATCGACCGTGCCGAAGACCGTGAGCGCTTCCAGCAGATGGTCCAGCGCCTGAACCTGCTGCAGCCGCCGAATGCGACCGTGCGCAGCGAAGAGGAAGCC ATCCGTGCCGCCGGTGATATTGGCTACCCGCTGGTGGTGCGTCCGTCCTATGTGCTGGGCGGCCGTGCGATGGAGATCGTCTACGAGCTGGACGAGCTCA AGCGCTACCTGCGCGAAGCGGTGCAAGTGTCCAACGACAGCCCGGTGCTGCTCGACCACTTCCTCAACTGTGCCATCGAGATGGACGTGGACGCTGTCTG CGACGGTACCGACGTGGTCATCGGCGCGATCATGCAGCATATCGAGCAGGCCGGCGTCCACTCCGGCGACTCGGCATGCTCGCTGCCGCCCTACTCGCTG AGCAAGGGCGTGCAGGACGAAGTCCGCGAGCAAGTGCGCAAAATGGCGCTGGAGTTGGGCGTGGTCGGATTGATGAACGTGCAGTTGGCGCTGCAGGGCG ACAAGATCTACGTGATCGAGGTCAACCCGCGTGCCTCGCGTACCGTACCGTTCGTATCCAAGTGCATCGGCACTTCGCTGGCGATGATCGCTGCACGCGT GATGGCCGGTAAGTCGCTCAAGGAGCTGGGCTTCACCGAGGAAATCATCCCGAACTTCTACAGCGTCAAGGAAGCCGTCTTCCCGTTCGCCAAGTTCCCA GGGGTTGACCCGATCCTCGGCCCTGAGATGAAATCCACCGGTGAGGTGATGGGTGTGGGCGACAGCTTCGGTGAGGCCTTCGCCAAAGCCCAGATGGGGG CTAGCGAAGTGTTGCCAAGCGGCGGCACCGCATTCATCAGTGTGCGCGACGACGACAAGCCGCAAGTGGCTGCCGTTGCCCGTGATTTGATCACCCTGGG CTTCGAGGTGGTCGCTACTGCCGGGACTGCCAAGGTAATCGAGGCTGCCGGTCTGAAAGTGCGTCGTGTCAACAAGGTGACCGAGGGTCGCCCGCATGTG GTCGACATGATCAAGAACGACGAAGTGTCGCTGATCATCAATACCACCGAAGGCCGCCAGTCGATCGCCGATTCCTACTCGATTCGCCGTAATGCGCTGC AGCACAAGATCTACTGCACCACTACGATCGCGGCGGGTGAAGCCATCTGCGAGGCGCTGAAATTCGGTCCTGAGAAGACCGTTCGTCGCCTGCAGGATCT GCATGCAGGACTCAAAGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCATTACCAAATATCCGATGACCGTCCAGGGCGCCCGCGCCCTGGAAGAAGAGCTGCTTTTCCTCAGCAAGACCGAGCGCCCGCGCCTGAGCCAGGCGAT CGGTGAAGCGCGTGAGCTGGGCGATCTCAAGGAGAATGCCGAGTACCATGCCGCCCGCGAGGAACAGGGCATGGTCGAAGCACGTATCCGCGATATCGAA GGTCGGTTGCAGAACTCGGTGGTGATCGATGTCACCACCATCGCTCACACCGGCAAGGTCATCTTCGGTACCACCGTCGTGTTGGCCAACACCGAGAACG ATGACGAGGTGACCTACCAGATCGTCGGCGAGGACGAAGCTGACGTTAGGCAAGGCAAGCTGTCGAGCAGCGCACCCATCGCCCGCGCCATCATTGGCAA GGAAGAGGGTGATACCGTCGTGGTCAAGACCCCGAGCGGAACCGTCGAGTACGAGATTGTCGAAGTCAAGCACATCTGACCGGCGCCAGCGCGCGCCGTC
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Amino Acid Sequence |
>carbamoyl phosphate synthase large subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLPTMGGQTALNCAL DLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGIAHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSP TKELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEM NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELQNDITGGRTPASFEPSIDYVVTKLPRFAFEKFPKADARLTTQMKSVGEVMAIGRTFQESLQKALR GLEVGACGLDPKVDLASSEASSILKRELTVPGAERIWYVADALRAGMSRDEIFALTGIDHWFLVQLEDLIKEEEKVKTLGLADIDKALMLRLKRKGFSDQ RLAKLLGVTDKNLRRHRHKLDVLPVYKRVDTCAAEFATDTAYLYSTYEEECEANPSTRDKIMILGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNC NPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTPLKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEA IRAAGDIGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDVVIGAIMQHIEQAGVHSGDSACSLPPYSL SKGVQDEVREQVRKMALELGVVGLMNVQLALQGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKSLKELGFTEEIIPNFYSVKEAVFPFAKFP GVDPILGPEMKSTGEVMGVGDSFGEAFAKAQMGASEVLPSGGTAFISVRDDDKPQVAAVARDLITLGFEVVATAGTAKVIEAAGLKVRRVNKVTEGRPHV VDMIKNDEVSLIINTTEGRQSIADSYSIRRNALQHKIYCTTTIAAGEAICEALKFGPEKTVRRLQDLHAGLKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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