Pseudomonas parafulva NBRC 16636 = DSM 17004, PPA02S_RS00445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva NBRC 16636 = DSM 17004 strain NBRC 16636, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGTGGCGGGGTCGAACTCGGCGGCGCGGCTGACGGCGGTGGAGATGGAGTCCAGCGCGGGGGATAGCAGGGCGAAGATTTCGTTGGCGCGGGCGGA GGGCTCCATGCTGCGGCCCGTACGCACGAACAGCGGGTCGTCGAACAGGTTGCGCAGGCGTGCGAGCGCCGCGCTGATGGCCGGCTGGCCGAGGAACAGC TTTTCGGCAGCACGGGTGACGCTACGTTCGTGCATCAGCGTTTCGAACACGATCAACAGGTTGAGGTCTACGCGACGGAGGTCGTTTCGATTCATCGGTG CGCTTCGCCTGAATGGGGGCAGGGGTGAATCTTAAGGCCAAAGGCTGGTAACCTGCACCCGTTTAGGTGGCCAATGCCAGGGAAAGTCAGGTGCCCAATC GATGACAGGCATGTCGACTATTAATGACCACTGATGGCCTAACCGCTAAAGCCCGGATAGAGTCAATGGTAATTAGCGTTTCACACAGGCGAGGTATGCG
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| DNA Sequence for Gene |
>PPA02S_RS00445
ATGTCCCGCATGATCCGTTTCCACAAGTTCGGCGCTGCCGACGTGCTCCGTTGCGAGGAGCAGGCCGAGCCGACACCCGCCGCCGGTGAGGTGCAGGTCC GCGTTGAAGCGGTAGGTATCAGCTGGTATGACGTGCTCTGGCGCCAGAACCTGGCATCGTCCCGTGCACGGCTGCCTGCCGGCATCGGTCATGAGATGGC CGGCGTGGTGACGGCAGTCGGGGAGGGCATTGACGATATCGCTGTTGGCGATCGGGTGGCGAGCTTCCCGGCCACCAGTGCCAACGACCACCCGGTATAC GGCGACGTCATCGTGCTGCCGCGCTCGGCGATCACCCGTTACCCGGATGTACTCACCCCCATCGAAGCGAGCGTGCACTACACGCCGTTGCTCATCGCCT ATTTTGCCTATGTCGACCTGGCCCGCGCCAAGGCAGGGCAGACGGCATTGGTGACTGATGCCAGCCACTGTGCGGGGCCGGCCTTCGTTCAGCTGGGCAA GGCGCTGGGGCTCAAGGTGTTCGCAGCTACCAAAGATGCCGAGCAGCGTGAATACCTGTTGGGGCTTGGGGCGGACAAGGTGATCGTCACCGAAGAGCAG GACCTGGTGATGCAGGTGGGCAAATACACCGACGGGCGCGGCGTGGACATGGTGCTCGACGGCCTTGGCGGGCCACAGATGTCGTTGCTGGGCGACGTGC TCGCCCCGCGTGGCAGCCTTGTGCTGTATGGCCTGCAAGGCGGTAACCAGACGCCGTTCCCAGCTTGCGCAGCGTTCCAGAAGAACATTCAGTTCCATGT GCATTGCATCGGCAATTTTACCGGCAAGCCCGAGCTTGGCATTGCCCAGGACCAAGTGGCGCTGCACCGCGCACTTCGCGATATCAACCAATTCACCGCC GACCAGTTGCTGACCCCGCAAATCATCAAGGTGTACCCCTTCGAGCAGGTGGTGGAGGCGCACCGGTACATGGACCAATGCCCATGTGGCGGGCGTGTGG TGCTGGATTTGTCGCAGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCACTGCCGTTCATCCACGAACCCGGGCTGGCCCCGGGTTTTTTGTGGGCGATATCATACGATTATTTATTATAAAAAAGAACATTCCTACAACTAGA GCAGTGCTGGACTACATTCCATAGATTGACTAACCAGCTGTTAGTAATATCTCGCCAACTATCCTCGCTTGAACTATCTCGGTCGACTCATCAAGCTGTC TATTCATCTTTGCTGACTGCTTTTTTTACCCCTATCTGTATCTTCAATTCGTTTTCCGTACCTCGATAATGGCCTAATGATAGTTTGCGCAAGGAGCGAG TGATGAACATGGCCAGGCCTGGTCCACGGATATGTGCAGCAGTTAAGTGGCGCCGTATTGCGGTGTTCTCGATGGTATGGCGACAGTGATGGGGCGTGTG CCCTGACCGATTTGCCGTACCCCTCGCGGGGGGACCCCGCAGCGTGCCGGAACAATAAAAGTGTGTTCGGCAGTGCTGGCCGCATGAAGTTGATGAGGTG
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| Amino Acid Sequence |
>alcohol dehydrogenase
MSRMIRFHKFGAADVLRCEEQAEPTPAAGEVQVRVEAVGISWYDVLWRQNLASSRARLPAGIGHEMAGVVTAVGEGIDDIAVGDRVASFPATSANDHPVY GDVIVLPRSAITRYPDVLTPIEASVHYTPLLIAYFAYVDLARAKAGQTALVTDASHCAGPAFVQLGKALGLKVFAATKDAEQREYLLGLGADKVIVTEEQ DLVMQVGKYTDGRGVDMVLDGLGGPQMSLLGDVLAPRGSLVLYGLQGGNQTPFPACAAFQKNIQFHVHCIGNFTGKPELGIAQDQVALHRALRDINQFTA DQLLTPQIIKVYPFEQVVEAHRYMDQCPCGGRVVLDLSQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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