Pseudomonas parafulva NBRC 16636 = DSM 17004, PPA02S_RS06860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva NBRC 16636 = DSM 17004 strain NBRC 16636, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGCATTCTCTACGAAAGCTACATTCACCCGCTGACGATCCTGTCGACCTTGCCGTCGGCCGGCGTCGGCGCGCTGCTGGCGCTGTACCTGA CCGGTGGCGAGTTCAGCCTGATCTCGCTGCTGGGGTTGTTCCTGCTGATCGGCGTGGTGAAAAAGAACGCCATCCTGATGATCGACCTGGCGCTGCAACT GGAGCGGCACCAGGGCCTGTCGCCCGAAGAGTCGATCCGCCGGGCCTGCCTGCTGCGCCTAAGGCCAATCCTCATGACCACGCTGGCCGCCATACTCGGT GCGCTGCCGTTGCTGCTGAGCCAGGCCGAAGGCGCGGAAATGCGCCAGCCCCTGGGGCTGACCATCATCGGCGGCCTGGTGTTCAGCCAGATTCTGACCC TTTACACGACGCCGGTGGTCTACCTGTACCTGGACCGCCTGCGCCACCGCTTCAACCGTTGGCGCGGTGTGCGCACCGACGCGGCACTGGAAACCCCGCT
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| DNA Sequence for Gene |
>PPA02S_RS06860
ATGACTTTTGCCAAGACTCCACTGCACCGTGCCTTGCAGGTGCTGACCCGCGGGCGCGGCTCGCGCCTGCTGGGTGCCGCGTTCAGCGTGGCGCTGCTCA GCGCCTGCACCCTGGCGCCCGACTACCATCGCCCTGAACTTGCCGGCACGGCGCAATTCAAGCATGCCGACGGCTGGACCCTTGCCAAGCCTGGCGATGC CATCGCCCGGGGCGCTTGGTGGGAGATCTACGGCGACACCCGGCTCAATGCGCTGGTGGCGGAACTCAACAGCAATAACCAGAGCGTTGCCCAGGCCGAA GCCCAGTATCGCCAGGCCCAGGCGTTGGTGCGCAGCAGCCGTGCCGGCTTGTTCCCCAGCCTGAACCTGAGCGTTAACAAGAACCGCTCGGCCCAGGGCA CCGGCAGTTCCAGTTCCAGCTTGTCTACCAACAGCAGCGGCATCCGCAATACCTACAACGCCCAGTTGGGTGTCAGTTGGGAGATCGACCTGTGGGGCAA ACTGCGCGAAACGCTCAATGCCAACGAAGCCAGCGCCGACGCCAGCCTGGCTGACCTTGCGGCCATGCGCCTGAGCCAGCAGTCCGAGCTGGTGCAGAAC TACCTGCAACTGCGGGTGATCGACGAACAGAAACGCTTGCTGGAGGCCACCGTCGCCGCCTACGAGCGGTCGCTGCGCATGAACCAGAACCAGTACCGTG CTGGTATTGCCGGCCCCGATGCCGTAGCCCAGGCGCGTACCCAGCTCAAGAGCACTGAGGCCGACCTGATCGACCTGGCGTGGCAGCGTGCCCAGTTCGA GAACGCCATCGCTGTGTTGCTGGGCAAGACGCCAGCGCAGTTTGCCTTGGCCGATAGCAAGGACATCCCGGCCTTGCCGCAGATACCCGTGGCGTTGCCG TCACAGCTGCTCGAAAGGCGCCCCGACATCGCAGCCGCCGAGCGCAACGTGATGGCGGCCAACGCCAATATCGGCGTTTCCCGTGCCGCGTACTTCCCAG ACCTGAGCCTGAGCATGAACGGCGGGTACTCCAGCAGCAGCTTCAGCAACTGGATCGAATTGCCCAACCGTTACTGGTCCGTGGGGCCGCAACTGGCGCT CACACTGTTCGATGCCGGCAAGCGCAGCGCCGAGGTAGACCGTACCGTGGCGGTGTATGACCAGACCGTGGCGCAGTACCGGCAGACGGTGCTGGACGGC TTCAAGGAGGTGGAAAACCTGCTGGTGCAGTTGAAGGTGTATGGTGACGAAGCGGTAGTGCGCCAGGAAGCCCTGGAAGCGGCCCGCGAATCCCTGCGCC TGACCGAGAACCAGTACCGCGCGGGGCTGATCGGCTACCTGGATGTGGTCAACGTGCAGGCTACCGCCCTGAGCAACGAACGCAGTGCGCTGAACCTGCT GCAAGGGCGCCTGGTGGCCAGTGTGCAACTGGTGGCGGCACTGGGGGGCGGTTGGCAGGCGCAGCAGGCGTTCAGCGAGCAGGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCACCGGGCGGCCCATTTTCGTTAGCAAAAACCCCGTGCGTTTCGCCAAAGCTTGAGTACAATCGTCAGCTTTTTCCGGGCCGCCCCGGCCCGTCTCCG GAAACTCAAATGCTGACCGCTAGCTATTCCTCTTCGCTGGTGTTGATTTCGCTGTGCGTGGCAATCCTGGCGTCCTACACCGCCCTTGACCTCACCGGCC GCATCGCCACGGCCAAAGGCCGTGCGGCTGCCGTGTGGACGGCGGGCGGCGCGCTGGCCATGGGGACCGGGGTGTGGTCCATGCATTTTGTGGGCATGCT TGCCCTGAGCCTTCCGGTCGACCTGGGGTATGACCTGCCCCTGACCGCGCTGTCGCTGCTGATTGCCGTGCTGTCCTCAGGCTTTGCCCTGTGGCTGGTC AGCCAGCCACACCTGCCCTGGCTACAGCTGGCGTTCGGGGCGCTGATCATGGGCGGCGGCATTGCCAGCATGCATTACACCGGCATGGCGGCGCTGCGCA
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| Amino Acid Sequence |
>RND transporter
MTFAKTPLHRALQVLTRGRGSRLLGAAFSVALLSACTLAPDYHRPELAGTAQFKHADGWTLAKPGDAIARGAWWEIYGDTRLNALVAELNSNNQSVAQAE AQYRQAQALVRSSRAGLFPSLNLSVNKNRSAQGTGSSSSSLSTNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASADASLADLAAMRLSQQSELVQN YLQLRVIDEQKRLLEATVAAYERSLRMNQNQYRAGIAGPDAVAQARTQLKSTEADLIDLAWQRAQFENAIAVLLGKTPAQFALADSKDIPALPQIPVALP SQLLERRPDIAAAERNVMAANANIGVSRAAYFPDLSLSMNGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAGKRSAEVDRTVAVYDQTVAQYRQTVLDG FKEVENLLVQLKVYGDEAVVRQEALEAARESLRLTENQYRAGLIGYLDVVNVQATALSNERSALNLLQGRLVASVQLVAALGGGWQAQQAFSEQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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