Pseudomonas parafulva NBRC 16636 = DSM 17004, PPA02S_RS05880 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 1 26 -
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 217 395 3.1E-28
CDD cd07971 OBF_DNA_ligase_LigD - - 398 513 5.73667E-52
NCBIfam TIGR02777 JCVI: DNA ligase D, 3'-phosphoesterase domain IPR014144 DNA ligase D, 3'-phosphoesterase domain 5 160 8.9E-72
Gene3D G3DSA:3.30.1490.70 - - - 225 393 4.7E-46
MobiDBLite mobidb-lite consensus disorder prediction - - 1 28 -
CDD cd04862 PaeLigD_Pol_like IPR033651 LigD polymerase domain, PaeLigD-type 558 782 1.04129E-109
MobiDBLite mobidb-lite consensus disorder prediction - - 191 210 -
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 203 396 1.49E-46
Gene3D G3DSA:3.90.920.10 DNA primase, PRIM domain - - 548 828 1.4E-94
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 414 510 6.0E-24
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 237 352 4.7E-46
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 398 518 4.3E-37
NCBIfam TIGR02776 JCVI: DNA ligase D IPR014143 DNA ligase D 225 809 0.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 398 519 9.85E-30
Pfam PF13298 DNA polymerase Ligase (LigD) IPR014144 DNA ligase D, 3'-phosphoesterase domain 38 141 6.3E-39
CDD cd07906 Adenylation_DNA_ligase_LigD_LigC - - 213 396 4.24037E-83
NCBIfam TIGR02779 JCVI: non-homologous end-joining DNA ligase, ligase domain IPR014146 DNA ligase D, ligase domain 215 515 1.4E-109
NCBIfam TIGR02778 JCVI: non-homologous end-joining DNA ligase, polymerase domain IPR014145 DNA ligase D, polymerase domain 542 783 5.3E-86
PANTHER PTHR42705 BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD - - 245 824 8.2E-105

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.