Pseudomonas parafulva NBRC 16636 = DSM 17004, PPA02S_RS10570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva NBRC 16636 = DSM 17004 strain NBRC 16636, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCAGGTTTCGCTCGCCGTGCGCCCGCATTTCAAATACATGGGCGCGAACTTCGAGATCTCCCTGGTCGGACGGCTCGACACGCAATGAGTGGTCTTTT CAGTCGTTTGAAGGTGGATCAGTCAGTTAGCCGCGAACCCTCCCTGCAGGAGAGCGCTTCCCAGAAGTTCGCCGCCATCAAGTGCCACCTCGAAACGTTA CTCAACGCTCGCCAGGGTTGCTCCAAAAGCAGCCCTGAACTGGGCCTGCGTGACTTCAACGGGCACGACGTCAGCAGTGGCGACCTTCTGCAGCAAGTGC GCGCGGACATCCGCCGCACCCTTCAGCGCTTTGAGCCGCGCGTGCACGTGCGAACGCTCAACGCCATGCCCGATTGTCATGCCCCGCTGGAGCTGCATTT CAGGCTGGACTGCCTGGTACAGGTCAACAACCACACGGAGCAGCTGCAACTGGAGCTGCTGGTCAACGGCCATAACCGCCACACCCGCGTGAGGTGACCC
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| DNA Sequence for Gene |
>PPA02S_RS10570
ATGACACTCAAAGACCGATTCAGCGAAGAGTTGCGTTACCTGCATGAACTGGGGAACGACTTCGCCCAAGACAACCCACAACTTGCCCGGCTGCTTGGCA AGGGTGGCAGCGACCCGGATGTCGAACGCCTGATGGAAGCCTTTGCATTTCTCACGGCCAAGCTGCGGCTCAAGCTGGAGGACGACCTGCCGGAGCTGAC GCACCCCATGCTGCAGCTGCTGTGGCCCAATTACCTGCGGCCTTTGCCAAGTGCCACGATCATTCAGTTTACGCCGCGCAAGCAGGCGCTCAGCCAGTCG CACCGTATCCCCAGCGGCTCACGGCTCTTTTCCAGACCCGTGGACGGAGTGCCCTGCGAATTTCGAACCTGCACAGCGGTGGACATCCACCCGTTCGAGA TCGATGCGGTAGGTGCGACCCAGACACTCGACAGTTCGGCGGTTTGGCTCGGTTTGCGAACATTGGTCGAGCGGCCATTGAATACCCTGGGCTGCGCCAG TCTCGACTTCCATCTGGGCGGAGACACCCTTACAGCCCGCACGCTGTATCTGTGGCTGTCCCAGTACCTTGATCAGGTCAGCGTGACTATCAATGGCGAG GTTCGCAGGCTGCCGTCCAGCAGCGTCGTCTTCCCGGGTTTCAGCCCGGACCAAGCGTTGCTGCCTTACCCCCAGAACGTCTTCGACGGCTACCGGATTC TGCAGGAGTATTTTGTATTTCCCGAGCGTTTCCACTTCTTCAGCGTAACCGGGCTGGAAAAGGCCTGGCCCGATCAAACGGCTGAGAGCGTCGGCCTCGA ATTTCACTTCACCCGCCAGTTACCGGATTCGCTGCGTGTCGGCAGCGCCGACTTCAGCCTGTTCTGCACCCCTGCGGTGAACCTGTTCAGCCACAGCGCC GAACCCATCGACCTCTCCAGCCGGCCCGCCCAGGTCGAGCTTACGCCCCGAGGTAAGCAGCCGCACGCCTATGAAATCTTCAGTGTCGACCAGGTCATCA GCACCCGCACGACCACTGATGGCAGTACCGGTGAACACCTTCGCACGTTCCGCCCTTTTGAGTCATTCGCCCATGAGATCGAGCATGTGCAAGGTCGCAC CGCCCTGTACTACCGGTACAGTATCGAAGACTCATTGCGGGGCGATGGCGTCATGCACCGCATCGCATTCGTACGTGCCGACGCCAATGCCTACATCGGC GAGCTGGAAACAGCGTCCATCGACCTGACCTGTACCAACCGCGACCTGCCGCTGGCGTTAACCGTCGATGACATCAATGTGACTTCCGAGGTCACACCAC CCTTGGCCACCTATACCAACCTGCGTCCTCCCACCCGCCCCTACCGGCCGGTACTGGACGGCCAGTTGCAGTGGGCCCTGATCTCCAACATGTCGCTCAA TTACCTGTCGCTGCTATCGGCCGAACCGCTGAAAGCGGTCATCAATGCCTATGACTTTGCCGCCCTGCATGACATCCAGCAAACCCGCACCACCCGTAAA CGCCTCGATGGCATTCGGGATATTCAAACCGAGCCTTTGGATTGGTTGATCAAGGGCCAACCCATTCGCGGGTTGCGTACACGGCTGGAGCTGGATCAAG GCGCATTCCTCTGCGAAGGCGACCTGTACCTGTTCGGTTGCGTACTGGCGCACTTCTTTGCCCTGTACGCCAGCATCAACGCCTTCCACCAACTGGAAGT GATCAACACCACCAACAACGAGCGCTACACATGGCCCATCCAGACCGGCAAACAACCGCTGTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGACCAGCTGCTCGCCGAGGCACACCAGTACAACTTCTTCCAGTTGCTGGAGCGCCTGCACGGCTTGCACGGGGATGACCTGGAACCACGCTGGCCTGC CCCGGCCACACGGCTGCGCGTACGGCTTGCCAGCGACCCGCGCCTGACCTTTCCCGTGTCCGACGTCTACAAGGCCGAACGCATGCCTGAAACAGAAGAC CGCTATCGCGTGTGCACCACATTCATGGGGCTGCACGGCACAGACTCGCCCTTGCCCACCTATTACCTGGAAGAAGTGTCGTACGAGCATGCCCATGGCA TCGGTGTGCGGCCGGCCTTCTTTGACTTTTTCAATCACTACCTGCTCAGCCTGTTGCACCGCATCTGGCGCAAGTACCGCTATTACATCCGCTTCCAGCC GGGCGCGACCGACGGCTTCTCGCAGTACCTCTTTGCCCTGCTCGGCCTGAATGACAAACAACTGCGCGGCGACACCCCGCTGCCCTGGAGCCGCCTGCTC
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| Amino Acid Sequence |
>type VI secretion protein
MTLKDRFSEELRYLHELGNDFAQDNPQLARLLGKGGSDPDVERLMEAFAFLTAKLRLKLEDDLPELTHPMLQLLWPNYLRPLPSATIIQFTPRKQALSQS HRIPSGSRLFSRPVDGVPCEFRTCTAVDIHPFEIDAVGATQTLDSSAVWLGLRTLVERPLNTLGCASLDFHLGGDTLTARTLYLWLSQYLDQVSVTINGE VRRLPSSSVVFPGFSPDQALLPYPQNVFDGYRILQEYFVFPERFHFFSVTGLEKAWPDQTAESVGLEFHFTRQLPDSLRVGSADFSLFCTPAVNLFSHSA EPIDLSSRPAQVELTPRGKQPHAYEIFSVDQVISTRTTTDGSTGEHLRTFRPFESFAHEIEHVQGRTALYYRYSIEDSLRGDGVMHRIAFVRADANAYIG ELETASIDLTCTNRDLPLALTVDDINVTSEVTPPLATYTNLRPPTRPYRPVLDGQLQWALISNMSLNYLSLLSAEPLKAVINAYDFAALHDIQQTRTTRK RLDGIRDIQTEPLDWLIKGQPIRGLRTRLELDQGAFLCEGDLYLFGCVLAHFFALYASINAFHQLEVINTTNNERYTWPIQTGKQPLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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