Strain | Pseudomonas parafulva NBRC 16636 = DSM 17004 strain NBRC 16636, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGCATGCGCCCGAGCTTTTCCACTGCGGCGCCACCTGCGCTTGGCGCCGAGCTGTTCGACTACCTGGTGGAGCGGGCCAAGGCCAGCCACCCCGAGGTTG CGACGGGCCAATTTGGTGCAGATATGCAGGTGCACCTGGTGAATGATGGCCCTGTAACATTAATGTTACAAATTTGAGGTTAAAAAACCCCTGCCCATTG GGAAAACAAGGGGTTTTGTACGATAAATAGTTGTTGCAGCCTGATGCGTTGTCACGCGACCTGCTGGATAATCGCGCGCTGCATGGGCCTGCGTTCGCAG GTTCGTTTCACTCTGACTCGAGCAATGTCTGGATCCGTTTGGGGAATCATTACGCCCTTACGGGGTCCGAACAGTGCTCGCCAACCCGGCATTTGTCGCT GGCCGTTGGTTTCATGATCTGTTTTCGGCGAGGGTTGCTCGTGATTGTTAGTCCCCAAAAAGCATCAAGAATCCCTGGCGTCCGGCTACGCAAGGCGCTG
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DNA Sequence for Gene |
>PPA02S_RS15540
ATGGCCAGCGTGGCGTTGGTCGGCCTGATGAGCGCGGGCCAGCTATGGGCATTCAATCTTGACGATGTTGCAGCCAAGGCAAAGGATCTGGCCGGCCAGA AGTACGAAGCCCCCAAAAGCAACCTGCCGGCCGTGTTCCGCGATATGAAGTTCGCGGACTACCAGAAGATTCATTTCCTGCAGGAAAAGGCCGAGTGGGC CAACGACAAGACGCCGTTCAAGCTGTCCTTCTACCACCAGGGCATGCACTTCGACACCCCGGTGAAGATCAACGAGGTCACCGCCACCAAGGTCGAGGAA ATCAAGTACGACCCGAGCCGGTTCGAGTTCGGCGACGTCCCGCATGACGCCGACGCCACCAAGAACCTCGGTTACGCCGGTTTCCGCGTGCTGTACCCGA TCAACAAGGCCGACAAGCAGGATGAAATCATGACCCTGCTTGGCGCCAGCTACTTCCGTGTGGTCGGCAAGGGCCATGTGTACGGCCTGTCGGCCCGTGG CCTGGCCATCGACACCGCGCTGCCGTCGGGGGAGGAGTTCCCGCGCTTCACCGAGTTCTGGGTCGAGAAGCCCCAGCCGGCCGACAAGCACCTGGTCATC TATGCCCTGCTGGACTCGCCGCGTTCCACCGGCGCCTACAAGCTCACCCTGCGCCCTGGCAACGACACGGTGGTAGACGTGCAATCGCGTGTTTACCTGC GTGACCACGTCAGCCGCCTGGGCATCGCACCGCTGACCAGCATGTACCTGTTTGGCCCTAACCAGCCCTCCAAGGTGCTGAACTATCGCCCGGCACTGCA TGACTCCGAAGGCCTGTCGATTCACGCCGGCAACGGTGAATGGCTGTGGCGCCCGCTGAACAATCCCAAGCACTTGTCGGTCAGCAACTTCAGCGTGGAA AACCCGCGCGGTTTCGGCCTGATGCAGCGCCAGCGTGCCTTCAGCGACTTCGAAGACCTGGACGACAACTATCAGAAGCGCCCAAGCGCGTGGATCGAGC CCAAGGGTGACTGGGGCAAAGGCTCCGTCGACCTGGTGGAGATCCCGACCGCCGACGAAACCAACGACAACATCGTTGCGTTCTGGAGCCCGGAAAAACT GCCTGAGCCGGGCGAAGCCATGGACTATGCCTACCGCCTGCACTGGACCATCGACGAGCCCAAATTCCAGGCCCCTGAGTTGGGCTGGGTGAAGCAGACC CTGCGCTCCACCGGTGATGTGAAACAGTCCAACCTGATCCGTCAGCCGGATGGCAGCGTTGCCTTCCTGGTCGACTTTGCCGGCCCTGCGCTGGCTGCTC TGCCGGAAGACACCCCGGTGCGCAGCCAGATCAGCGTGGGCGACAACGCCGAAGTTGTGGAAAACAACCTGCGCTACAACCCTGAAACCAAGGGCTGGCG CCTGACGTTGCGGCTCAAGGTGAAGGATGCCAATAAAGCGACCGAGATGCGTGCCGCACTGGTGCGTGATGTGCCGGTAGAAGCTGCCGCACCTGCCCAG GAAACCAAGCAGGACAAGGCTGCTGCCAAGCATGCCAAGGCCGGCAAGGCGACCAAGGCCGAACAACCTGCCGCCGAGGCGGCGCCCACCACCGGGGCCC CGGCCACCACCGAGAAGGTGCTGACCGAGACCTGGAGCTACCAGTTGCCTGCCGATGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CTCAAACGCAAGGCCGGTATCGCTTGGCGAGTACCTGGCCCACCTCCCCCTGAGTGACGAGCAGCGAGCAGAGCTTGCCAGCTGCACGTCATTCAGCGAG CTGCACCAACGCCTGGCTGCCACCCCCCACGCCAGCCCTGCCGAGGCCGTGCAGGCCTCGGTGGGCTCGCGCCTGACCGTGGGCAATGCGGCCGAGCTTG AAGACGCCGAGATGCTCAGTGTCGATGGCAGTGGCCGCCTGCGCCTGAAGATCGCCCCGCCGATCAACCGCACCAAGGTGGTGCCAGAGCCCTGGCGCAC CAACGTGCTGGTGCGCCTGTGGCGGCGCATGACAGGGCGCCCCAATGCGCCGCAGCCACCCAAGCGCGAGCTGCCGGCAGCGCGTTGGCGCACGGTGGGC TCCATCCGCCGGTACATCCTGCTCACCCTCATGATCGGCCAGACCCTTGTCGCCGGCTGGTACATGAAGAGCATCCTGCCGTACCAGGGCTGGTCGTTCG
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Amino Acid Sequence |
>glucan biosynthesis protein G
MASVALVGLMSAGQLWAFNLDDVAAKAKDLAGQKYEAPKSNLPAVFRDMKFADYQKIHFLQEKAEWANDKTPFKLSFYHQGMHFDTPVKINEVTATKVEE IKYDPSRFEFGDVPHDADATKNLGYAGFRVLYPINKADKQDEIMTLLGASYFRVVGKGHVYGLSARGLAIDTALPSGEEFPRFTEFWVEKPQPADKHLVI YALLDSPRSTGAYKLTLRPGNDTVVDVQSRVYLRDHVSRLGIAPLTSMYLFGPNQPSKVLNYRPALHDSEGLSIHAGNGEWLWRPLNNPKHLSVSNFSVE NPRGFGLMQRQRAFSDFEDLDDNYQKRPSAWIEPKGDWGKGSVDLVEIPTADETNDNIVAFWSPEKLPEPGEAMDYAYRLHWTIDEPKFQAPELGWVKQT LRSTGDVKQSNLIRQPDGSVAFLVDFAGPALAALPEDTPVRSQISVGDNAEVVENNLRYNPETKGWRLTLRLKVKDANKATEMRAALVRDVPVEAAAPAQ ETKQDKAAAKHAKAGKATKAEQPAAEAAPTTGAPATTEKVLTETWSYQLPADE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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