Pseudomonas parafulva NBRC 16636 = DSM 17004, PPA02S_RS15355

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00073
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1438 1498 1.1E-18
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1227 1363 1.1E-14
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 439 517 2.12125E-9
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1041 1178 9.2E-8
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 715 837 3.77E-13
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1530 1641 4.1E-28
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1180 1361 1.33E-36
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 890 987 7.0E-8
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1324 1342 4.3E-12
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 441 528 2.5E-12
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1363 1496 1.7E-23
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1528 1641 2.3E-36
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 890 1021 1.9E-29
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 18 113 2.1E-7
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 295 417 9.81E-10
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 439 570 7.7E-27
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 439 562 1.09E-24
Gene3D G3DSA:3.40.50.2300 - - - 1530 1649 2.3E-41
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 577 662 8.5E-13
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 575 670 0.052
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 892 985 1.3E-15
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1268 1282 4.3E-12
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1348 1361 4.3E-12
Coils Coil Coil - - 1072 1099 -
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 1010 1639 0.0
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 23 141 9.5E-10
SMART SM00260 chew_2 IPR002545 CheW-like domain 1356 1500 2.6E-22
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 575 691 1.44E-20
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 920 988 6.50566E-8
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1529 1646 7.4E-37
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1530 1641 2.98288E-33
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1223 1364 1.8E-22
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1179 1363 1.2E-60
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1369 1500 3.5E-22
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 24 136 1.03E-18
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 891 1008 1.96E-27
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 439 536 0.032
CDD cd16916 HATPase_CheA-like - - 1186 1361 3.87487E-78
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 716 841 8.5E-10
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 575 671 3.84036E-7
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1178 1363 7.4E-53
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 571 697 2.8E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.