Pseudomonas parafulva NBRC 16636 = DSM 17004, PPA02S_RS21270

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 345 436 6.6234E-7
Coils Coil Coil - - 523 543 -
Gene3D G3DSA:1.20.5.1930 - - - 516 603 9.0E-13
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 653 737 2.47187E-28
CDD cd01007 PBP2_BvgS_HisK_like - - 42 262 2.84145E-49
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 331 446 1.0E-11
Gene3D G3DSA:3.40.190.10 - - - 129 224 5.8E-43
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 208 739 1.0E-58
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 544 610 5.1E-14
Gene3D G3DSA:3.30.450.20 PAS domain - - 331 456 2.7E-20
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 612 739 5.5E-28
SMART SM00091 pas_2 IPR000014 PAS domain 326 392 2.7E-4
Pfam PF08448 PAS fold IPR013656 PAS fold-4 333 441 1.0E-9
Gene3D G3DSA:3.40.190.10 - - - 34 261 5.8E-43
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 52 263 3.1E-20
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 436 528 2.58E-9
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 339 448 1.06E-20
SMART SM00091 pas_2 IPR000014 PAS domain 451 524 5.1
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 620 738 4.45E-17
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 44 265 4.4E-12
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 45 264 8.27E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.