Pseudomonas oryzihabitans RIT370, UM91_RS11515
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGTTCCTCTGCCTGGCGGCGCTGTACGAGAGCTGGTCGATTCCGATCGCGGTCATCCTGGTGGTGCCGCTGGGGGTGGTGGGGGCCTTGCTGGCCACC TACTTCCGTGGCCTGGCCAACGACGTCTTCTTCCAGGTCGGTCTGTTGACGACCATCGGTCTGGCGGCGAAGAACGCCATCCTGATCGTGGAATTCGCCA AGGAGCTGCACGAGGGCGGCAAGAACATCGTCGATGCGGCGGTGGAGGCCTCGCGCATGCGCCTGCGGCCCATCATCATGTCCGCCATGGCCTTCATCCC GGGCGAGGGGCCCCCGGCGATCTCCTCGGGCGCGAGCTCCGGCAGTCAGCACGCCGTGGGTACCGGCGTGATCGGCGGCATGCTCACCGCCACGATACTG GCGATCTTCTGGATTCCCATGTTCTACGTGGTGGTCAGCAGCCTGTTCAAGGACAAGGCCACCAAGGACCAGGAAGCCCATGGCAAGGAAGGACACTGAT
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| DNA Sequence for Gene |
>UM91_RS11515
ATGAAGAAGTCTCTCTTGGCGGTGGTCGTGGGCATGCTGGCCGTCTCCGGCTGCAGCCTGATCCCCGACTACCAGCGACCCAACGCGCCGGTGGAGAATG CCTGGCCCCATGGCCAGGCCTACGATGCCCTGACGGTCAATCGCGACCAGCAGGCGGCCGACATCGGCTGGCGCGATTTCTATCGCGATCCGGCCCTGCA GCAACTGATCCAGCTGTCGCTGGACAACAACCGCGACCTGCGCCAGGCCGCGCTGAACGTGCGCCTCTACCAGGCGCAGTACCGCGTGCAGCGCGCCGAG CTGTTTCCCGACATCAGTGTCAGCGGCACCGGGACCCGTACCCGCCAGCCGGAGGACCTGAGCCAGGTCTCCGCCATCCGCGAATTGCTCGCCGGCAACA GCGCCAACGGCGCGGGTGGCGGTGGCGGCGGCAGCATCAGCAGCCAGTACAGCGTGACCCTGGGCTTCACCTCCTATGAGCTGGACCTCTTCGGTCGCCT GCGCAGCCTCAGCGAGCAGGCGCTGCTCAACTACTTCGCCACCAGCGAAGGACGTCGCAGCACCCAGATCTCGCTGGTCTCGGAAGTGGCTAACGCCTAC TACGCCTGGCTCACCGACCAGCGCATGCTGCAACTGACCCGCGAGACCCTGGACGCCTATCAGCGCTCCTACGACCTGACCCGTCAGACCGTGGAGAACG GCGTGGCCAGCGGCCTGGACCTGCGCCAGTCGCGCACCGCCCTGGAAGGGGCGCGGGCGAATCTGGCGCAATACACCCGCCAGGTGGCCCAGGATCGCAA CGCCCTGGCCTTGCTGCTGGGCACCTCGATCCCGGCCGACCTGCCGCAGGGCAAGGGCCTGGACGGCAAGGACCTGCTCGCCGACCTGCCGGCCAACCTG CCGTCGGATCTCCTGCAGAAGCGCCCGGACATCCTCCAGTCCGAGCTGCAGCTGCGCGCCGCCAACGCCAACATCGGCGCGGCGCGGGCGGCCTTCTTCC CGCGCATCAGCCTGACCGCCCAGGGTGGCACGGCCAGTCGCGATCTGAATGGCCTGTTCGACGCCGGCTCCGGCTACTGGACCTTCTCGCCGAGCATCAA CATCCCGATCTTCACGGCCGGCAGTCTCAAGGCCAGCCTGGATGCGGCCAGGATCCAGAAGGACATCAACGTCGCCACCTACGAGAAGTCGATCCAGACC GCCTTCCGCGAAGTGGCCGATGCCCTCGCGGCGAAGGGCACCTACGACGACCAGTTGCAGGCCCAGCAGGACCTGGTGCAGGCCAGCCAGGAGTACTACG ACCTGGCCAACCTGCGCTATCGCCAGGGCATCGACAACTACCTCACGGTGCTCGACGCCCAGCGCTCGCTGTATAGCGCCCAGCAGCAGCTGATCACCGA TCGACTCAACCAGCTCAACAGCGAGGTCCCCCTGTACAAGGCCCTCGGCGGTGGCTGGCTGGAGCGCAGCCAGACGCGACCGCCGCTGGCGGCCAAGCCC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTGCTCCAGCAAGACGCCGGCCTCGTGCCGGCGTTCTTCTGTCCGGGGTGCCCGTCTATCGACGCCGCTGGGGGGCTGGGTATACTGCCCCCTGTCCC TTTCTCTGGAGTCTCTGCATGCGCTATCGCCTGTTGCTCGGCCTGCTCGCCGCCACTGGTCTGACCCTGGCCGGCTGCGCCAGCAGCCCCCAGCAATTGA GTCCGCAACCCCAGATCACCGCGCCCATCGCCCCGGTCGGCCAGGGCCAGCCGGTCTCGGTCCGGGTGGTCGACGGTCGCTCCTCCTTTACCCTCGGCAC CCGTGGCGGTCTCTATCCCGACACCAGCGTGGTGGTGGTGCAGACCCAGGACGTGATTCCCAAGCTGCAGGCCGAAGCCGAGAAGGCGGTCCGCCAGATG GGCTTCACCCCGTCGCCCAATGCCGGCCCCGGCGCGCCCCAGCTGACCCTGACCCTGGCCGAGCTGAACTACCAGTCGCCCAAGGAACTGTACGTCACCG
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| Amino Acid Sequence |
>multidrug transporter
MKKSLLAVVVGMLAVSGCSLIPDYQRPNAPVENAWPHGQAYDALTVNRDQQAADIGWRDFYRDPALQQLIQLSLDNNRDLRQAALNVRLYQAQYRVQRAE LFPDISVSGTGTRTRQPEDLSQVSAIRELLAGNSANGAGGGGGGSISSQYSVTLGFTSYELDLFGRLRSLSEQALLNYFATSEGRRSTQISLVSEVANAY YAWLTDQRMLQLTRETLDAYQRSYDLTRQTVENGVASGLDLRQSRTALEGARANLAQYTRQVAQDRNALALLLGTSIPADLPQGKGLDGKDLLADLPANL PSDLLQKRPDILQSELQLRAANANIGAARAAFFPRISLTAQGGTASRDLNGLFDAGSGYWTFSPSINIPIFTAGSLKASLDAARIQKDINVATYEKSIQT AFREVADALAAKGTYDDQLQAQQDLVQASQEYYDLANLRYRQGIDNYLTVLDAQRSLYSAQQQLITDRLNQLNSEVPLYKALGGGWLERSQTRPPLAAKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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