Pseudomonas oryzihabitans RIT370, UM91_RS10295 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGAGCGCCGCCGGCAAGGTGGGCGTGGCCAACCTGGTGATGCACTCCAAGCAGCACCTGGCGGTGATCATGCCGCTGGGCGACGCCCTGGTGCTCAACA CCCTGCGCTGGGCCGACGAGGTGCGGTCCGCAGAAGACGTCGGGCTCGAGGGGCTGGACGCCAAGGTCAGCAAGAAGGAAGTGGACATGGCCCAGCGCCT GGTGGACGACATGACCGAGCAATGGGACCCGGAGCAGTACCACGACACCTTCAAGGACAACGTCATGTCGCTGGTAGAGCGCAAGCTCAAGGACGGCAAG CTCGAAGCCGTCGCCGAGGAGCCCGAAGCCGAGGACAGCGGCGCCGACGTCATCGACCTCACCGAATTGCTGCGCCGCAGCCTGGGTGGCAAGAAGGACA AGGCCAAGGAGGCGCCCAAGTCCAAGAGCTCCGGCCGTTCGACCACCCGGCGTAGCCCTGCCGCCAGCCGCACCCGCAAGGCCAAGTGAGGAGCGCCGCC
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| DNA Sequence for Gene |
>UM91_RS10295
|ligD
ATGGCCAGCTCGACCAGCGAATACAACCGCAAGCGCAACTTCGACATCACCGCCGAGCCGCGTGACGAGGGCAGCTCCCGCCGGCGCAAGGCCAAGGGGG CCCTGAGCTTCGTCATCCAGAAGCACGACGCGCGCCGCCTGCACTACGACTTCCGCCTGGAGCTGGATGGCACCCTCAAGAGCTGGGCGGTGCCCAAGGG TCCCAGCCTCGATCCCGGCGAAAAGCGCCTGGCGGTGCAGGTGGAGGACCACCCCCTCGCCTACGGCAGCTTCGAAGGCAGCATTCCCGAAGGCCAGTAC GGCGCCGGCGATGTCATCGTCTGGGATCGTGGCGAGTGGGAGGCGGATGGCGATGCCGCCGAAGGCTATGCCGCGGGCAAGCTCAAGTTCGAACTCAGGG GTGAAAAGCTGCGCGGTCACTGGACCCTGGTGCGCACCCGGCTGCAGGGCCACAGCGACAAGCCGCAGTGGCTCTTGATCAAGGAGCGCGACGACCAGGC CCGCGACACCGCCGACTACGAGGTGACCGCTGCCGAACCCGACAGCGTGCTGAGCGACAAGACCCTGCCTCGGCTGGCGCAGTCCAAGGCCAAGGGCAAA ACCTCCGCCAAAGCCAAGGCGACCAAAACGCCGACCCGCCAGCCCACGGCCAAGGCGCGCAAGGCCAAGCTGCCCGAGATCCTGGAAGCCCAGCTGGCCA CCCTGGTCGACAGTCCGCCGGCCGGCGGCTGGCTGTACGAGGTGAAATACGACGGCTATCGGCTGCTCGCCCATATCGAGGGCGGCGAGGTGCGCCTCTT CACCCGCAGCGGCAACGACTGGACCGAGCGCCTGCCGGAGCAGGCCAGGGCCCTGGCCGCGCTGGGCCTGGAAAACGCCTGGCTGGACGGCGAGATCGTG GTCAACGACGCCCAGGGCGTCTCCAGCTTCCAGGCGCTGCAGAATGCCTTCGAGACCGGCAAGGCGACCCGCATCACCTATTACCTGTTCGACCTGCCCT ATCTCAATGGCGCGGACCTGCGCGAGGTGCCGGTCGAGCAACGCCGCGAGTTGCTCGGCAAGCTGCTGGAAGAGAGCAACGACAGCGAGCTGCTGCGCTT CTCCGCCGCCTTCGAGGTGCCGGCCGATCGCATCCTGGCCAGTGCCTGCGAACTCGGGCTCGAAGGGGTCATCGGCAAGCGCCTGGGTAGCCCCTACCGT TCGCGGCGCAACAAGGACTGGATCAAGCTCAAGTGCGCCCACCGCCAGGAATTCATCATCGTCGGCTACACCCCGCCCAAGGGCGGCCGCCAGCACCTGG GCGCGCTGCTGGTGGCGCTGCACGATGACCAGGGCCAGCTGCACTATGCCGGCAAGGTCGGTACCGGCTTCACCGCGGCCGTGCTCAAGCAGCTGCACGC CCGCTTCCAGCCGTTGATCGTCGATCAGCCGCCGGTGGTGGATCCGCCCAAGGGCGCCGCCTATCGCGAAGTGACCTGGCTGCGGCCCGAGCAGCTGTGC GAGATCGCCTATGCCGAGCTGACCCAGGACCGCATCGTCCGCCAGGGCGTCTTCCACGGCCTGCGCGACGACAAGCCGGCCGAGGGCATCGGCTTGGAAG AGGCGACACCAGCCCGCGAGGCCGAGGCGCCGCGCCCGTCCGCCGCACGCCGTCCGTCTGCGGGCAAGCAGCAGGACGCCACCGTCGCCGGGGTGCGCAT CAGCCATCCCGAACGGGTCATCGACGAAGCCAGCGGCGCGCGCAAGCTCGACATCGCGGGCTATTACGCCGCCGTCGCCGACTGGATCCTGCCGCACCTG GCCGACCGACCCGTGGCCCTGGTCCGGACGCCCGAGGGTATCGCCGGCGAGCAGATCTTCCAGAAGCACAAGCAGACCCTGGCGATCCCCCATATCCGCG AACTCGATCCGGCGCTGGATCCGGGGCATGCCCCGCTGATGGTCATCGACAGTCGCGAGGCCCTCATCGGCGCGGCCCAGATGGGCACGGTGGAACTCCA TACCTGGAACGCTACCGCCGACCGCATCGACCGGCCCGACCGCTTCATTCTCGATCTCGACCCTGATCCCGCCCTGCCCTGGTCGCGCATGCTGGAGGCG ACGGGGCTGGTGCTGACCCTGCTCGACGAGCTGGAGCTGCAGGCCTTCGTCAAGACTAGCGGCGGTCGCGGCCTGCACCTGGTGGTGCCGCTGGATCGGC GCCAGGACTGGGACACCGTCAAGGCCTTCGCCCAGGCCGCGGCCCAGCACCTGGCCAACACCCTGCCCAAGCTCTTCGCCGCCAAGATGGGCGCCCAGAA TCGCCAGGGGAAGATCTTCGTCGACTACCTGCGCAATCGCCATGGCGCCACCACGGTCAGCGCCTTTTCCCTGCGCGCCCGTCCCCACCTCGGCGTTTCG GTACCCATCGCCCGGGATGAGCTGGCGACCCTGGAGGCCAGCGACCAATGGCGCTTCGACTCCCTGCTGGAACGCCTCGAAGGGCTCAAGGACGACCCCT GGGCCGGGTATGCCGAGATACGCCAGAGCCTTACCGCAGCGCGGCGCAAGCGGCTCGGCGTAGCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGATGCGCCTGCCGTCGGCAAGCGTACCGCCTAAGCGAAACCCCTTATCGCTGCCCGTGGTCTGCACTAGCGAGCGCTGTCGTGGACAGCGCCGTCGCCA GCCACGGGATGGAGCCGATGTCGATCGATCTGGATAGCCTCCAGGACACCCTGGACGAGTGGGCCTATGACGAGGTCACTCCCGCACTGCTGCAACACCG ACTCCAGATTCTCAACCAGCGCGGTCTCGACCGCCTGCCGTTGCCCGGCCAGGGTCAGACCCTGGAGCGTTGGCGCGCCCTGGCCCAGGTCGCCCATCAT GACTTGGGCCTGGTCAAGCTGTACGAAGGCCACACCGATGCCCTGGCCATCCTGAGCGAACTGGAGGGCTACGCTCCGCCCGAAAGCCTCTGGGGCGTCT GGGCCGCCGAGCCGCCCGATGCCCGCCTGCTGGTGCGCTACAGCGCCGACGGCGTGGTCACCCTGCACGGCCGGAAGTCCTGGTGCTCCGGCGCCTCCCT
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MASSTSEYNRKRNFDITAEPRDEGSSRRRKAKGALSFVIQKHDARRLHYDFRLELDGTLKSWAVPKGPSLDPGEKRLAVQVEDHPLAYGSFEGSIPEGQY GAGDVIVWDRGEWEADGDAAEGYAAGKLKFELRGEKLRGHWTLVRTRLQGHSDKPQWLLIKERDDQARDTADYEVTAAEPDSVLSDKTLPRLAQSKAKGK TSAKAKATKTPTRQPTAKARKAKLPEILEAQLATLVDSPPAGGWLYEVKYDGYRLLAHIEGGEVRLFTRSGNDWTERLPEQARALAALGLENAWLDGEIV VNDAQGVSSFQALQNAFETGKATRITYYLFDLPYLNGADLREVPVEQRRELLGKLLEESNDSELLRFSAAFEVPADRILASACELGLEGVIGKRLGSPYR SRRNKDWIKLKCAHRQEFIIVGYTPPKGGRQHLGALLVALHDDQGQLHYAGKVGTGFTAAVLKQLHARFQPLIVDQPPVVDPPKGAAYREVTWLRPEQLC EIAYAELTQDRIVRQGVFHGLRDDKPAEGIGLEEATPAREAEAPRPSAARRPSAGKQQDATVAGVRISHPERVIDEASGARKLDIAGYYAAVADWILPHL ADRPVALVRTPEGIAGEQIFQKHKQTLAIPHIRELDPALDPGHAPLMVIDSREALIGAAQMGTVELHTWNATADRIDRPDRFILDLDPDPALPWSRMLEA TGLVLTLLDELELQAFVKTSGGRGLHLVVPLDRRQDWDTVKAFAQAAAQHLANTLPKLFAAKMGAQNRQGKIFVDYLRNRHGATTVSAFSLRARPHLGVS VPIARDELATLEASDQWRFDSLLERLEGLKDDPWAGYAEIRQSLTAARRKRLGVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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