Pseudomonas oryzihabitans RIT370, UM91_RS21700
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGTGCTCGGCGTGCTCTACGAAAGCTATGTCCACCCCCTGACCATCCTCTCGACGCTGCCGTCGGCCGGGGTAGGGGCCTTGCTGGCCATCCAGCTCA CCGGTGGCCAGTTCAGCCTGATCTCCATGCTCGGGCTGTTCCTGCTGATCGGGGTGGTGAAAAAGAACGCCATCATGATGGTGGACCTGGCGCTGCAGCT GGAACGCCAGCAGGGCCTGACGCCCGAGGAGGGCATCCGCCAGGCCTGCCTGCTGCGCCTGAGGCCCATCCTCATGACCACCATGGCCGCCATCCTCGGC GCCGTACCGCTGCTGATCGGCGATACCGAAGGCGCCGAAATGCGCCAGCCGCTGGGCCTGGTGATCGTCGGCGGGCTGGTGCTGAGCCAGATTCTCACGC TCTACACCACCCCGGTGGTCTATCTCTATTTCGAACGCCTGCGCCGCCGCGTCAATCGCTGGCGCGGCATCCGTACCGACGCTGCCCTGGATACGCCGCT
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| DNA Sequence for Gene |
>UM91_RS21700
ATGACCCCAACCCTGCGCCTGCCGACGCTGACCCTGGCTCTGCTGCTGGCCGGCTGTACCCTGGGCCCAGACTACCAGCGGCCGACCACCACGGTGCCGG TCGCCTATCGCCACGCCGAAGGCTGGCAGGCGGCGGCGCCCAAGGACCTGGAGATCCGTGGCGACTGGTGGCGGCGCTATGACGATCCGACCCTCGACCG TCTGATGGTCCAGCTCAACCAGCGCAACCAGAGCCTGGCCCAGGCCGAGGCGACCTATCGGCAATCCCTGGCCCTGGTCAGCCAGGCGCGGGCGTCGCTG TTCCCGACCCTCTCCAGCAGCCTGGGCGCCACCCGCTCCGGGCGCGGGGGTGGTTCGGGCAGCAACACCGTCATCCGCAACTCCAATGGCACCAGCAGCA CCGTCAGCAGCGGTGGCTCCAGCACCATCAGCAACGCCTACGACGCCAGTCTGGGGGTGAGCTGGGAGCTGGATCTCTGGGGCCGCGTCCGGCGCCAGGT GGAGGCGGATCGGGCCTCCGCCCAGGCCAGCGCCGCGGAGCTCGCGGCCACCCGCCTGAGCCTGCAGACGCAACTGGCGACCAACTACCTGCAACTGCGC GTACTGGACGCCCAGCAGCGACTGCTCGACGCCACCGTGGCCGCCTACGAGCGATCCCTGCGCCTGACCCAGAATCAGTACCGCGCCGGCATCGTCACCC CGGCGGATGTGGCCCAGGCCACCACCCAGCTGAAGAGCACCCAGGCCGACGCCATCGACCTCAGGTATCAGCGTGCCCAGCTGGAAAACGCTATCGCGGT GCTGGTCGGCGAGGTCCCGGCCAATTTCCAGCTGGCCGCGGTCAAGACGATTCCCGAGTTGCCGCCGCTGCCGAGCGCCGTGCCCTCGACGCTGCTCGAA CGTCGTCCGGACATCGCCCAGGCCGAGCGCCAGGTCATGGCCGCCAATGCCGCCATCGGCGTCGCCGAAGCCGCCTATTATCCCGACCTGACCCTGAGTG CCAGCGGTGGCTACAGCGCCAGCCAGTGGGGCAACCTGATCAGCACGCCAAATCGCTTCTGGTCGATCGGGCCGTCCTTTGCCCTATCGCTGTTCGATGG CGGCCTGAGACGCGCCCAGGTGGAGTCCGCCGAGGCCAGCTACGACGCCAGCGTCGCCGGTTATCGCCAGACCGTGCTCGCGGGCTTCCGCGAGGTGGAA GACTATCTGGTGCAGTTGAGTACCTACAGCGACGAAGCCGGCGTGCGCCAGGAGGCCCTGGATGCCGCGCGTCGCGCCCTGCAACTGGCCGAGAACCAGT ACCAGGCCGGCCTGATCGGCTATCTCGACGTGGTCACCCTGCAGACCACCGCCCTGAGCAACGAGCGCACCAACCTGACCCTGCTCGGCAGTCGCCTCAG CACCAGCGTCCAGCTGATCGCCGCGCTCGGCGGTGGCTGGGATGGCAATCTCACGCCGCCCCCACCGCCACGGCGGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTGAGCAGGAAAAAGCCGCGCAGATTCTGGATTGTCGAGGCTGTGGGCGCGCCTTTGGGCGAGGCACGACGGCCGATCACCGGCGTGCCGGAGTGGAT GGAGTTGAACGCTTGCGTGGATAGCCCCCTCTCCCTGCGGGAGAGGGCTGGGGTCAGGGGGCCCTTTGCCGCGAAGTCCCCAGTGGAACAGGCTGCGCCG TTTTCCACGCTACTGCACGGGAGGGCAACGTCACGCCCCAGCGGCCCTGACGGCGGGCACAAAAAAGCCGGGCGATGGCCCGGCTTTTTCACGACTGGCG CTTAGTTGGGGAAGAGTTCGCCCAGCTTCATGCTCAGCATCATGTTGCCTTCGACGCGCAGCTTGCCGGACATGAAGGCCTGCATGCCGTCGGTCTCGCC GCTGACGATGCCGGCCAGGGTGGCCTGGTCCATGATCAGGGTGCAATCCGGGTCGGCGGCGTCGCCCTGCTGGACGTCGCAGGTGCCGTCCTTGACGACC
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| Amino Acid Sequence |
>RND transporter
MTPTLRLPTLTLALLLAGCTLGPDYQRPTTTVPVAYRHAEGWQAAAPKDLEIRGDWWRRYDDPTLDRLMVQLNQRNQSLAQAEATYRQSLALVSQARASL FPTLSSSLGATRSGRGGGSGSNTVIRNSNGTSSTVSSGGSSTISNAYDASLGVSWELDLWGRVRRQVEADRASAQASAAELAATRLSLQTQLATNYLQLR VLDAQQRLLDATVAAYERSLRLTQNQYRAGIVTPADVAQATTQLKSTQADAIDLRYQRAQLENAIAVLVGEVPANFQLAAVKTIPELPPLPSAVPSTLLE RRPDIAQAERQVMAANAAIGVAEAAYYPDLTLSASGGYSASQWGNLISTPNRFWSIGPSFALSLFDGGLRRAQVESAEASYDASVAGYRQTVLAGFREVE DYLVQLSTYSDEAGVRQEALDAARRALQLAENQYQAGLIGYLDVVTLQTTALSNERTNLTLLGSRLSTSVQLIAALGGGWDGNLTPPPPPRRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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