Pseudomonas oryzihabitans RIT370, UM91_RS05575

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas oryzihabitans strain RIT370 contig3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGGCAACCCTTTGCCGATGCCCAGACCCGCTTCTGGCTGTCCGGCCTGACGGCGGCTAAGGCGACGCAACCCGTCTCCGCCTCAAGCGAGGCGTGCCAGG ACAGCTGGAGCGAAGCCCTTGCCGAAGCCCTGGGGGAGTTGCGCGCGAGCGGCCTCAAGAGCGCCGTGCGCCACCTGCAGCAGCGCAGCTGCAGTGCCCA GGGCGAACGCCAGCGCCTGCTGTGGGATCTGGCCAGCGTCCGGTTGCTGATCCAGGCCCCCCAGTTCGAACTGGCCCCCCTTCAGCCCGCGGCCCTGGAT GCCGAACACGGCGCCCTGCTGGCGCACTGGGAGCCGCAACTGGCGCTGGAGATCCTGCAGGCCCGCCGCCAGTGCCTGGAAGCCCTTCCCGCCACCGCCG ACAGCCGGATGCAGCTGCAACAGCTGCGTCCGCGACTCTGCCGCCTCGATCTCGAAGCGGCTCTCGACTGAGGCTTGTCCTCATACCCAAGGAGAAACAC
DNA Sequence for Gene
>UM91_RS05575
ATGGCCAAAGAAGGCTCGGTTGCCCTGAAAGAACGCATCAACGTCACGGTTCGACCCGCCAGCGGCGGTGCCGAGGAAGAACTCGAACTGCCCCTCAAGC TCATGGTGCTGGGCGATTTCACCCAGCGAGCCGACGACCGCAAGCTCGAAGACCGCAAGCCGGTAGCCGTCGACAAGGACAACTTCGATGAGGTGATGGC CAAGCAGCAGCTGGGCCTGACCCTGGCGGTACCCAATCGCCTGCAGGACGACAGCCAGGACGATCTGGCCGTCCAGCTCGACCTCAAGGCCATGGCCGAC TTCAGCCCGGCGCGGCTGGTGCAGCAGGTGCCCGAACTCAAGCAACTGATGGATCTGCGAGATGCCCTGGTGGCGCTCAAGGGGCCGCTCGGCAACGCCC CGGCGTTCCGCAGGGCCATCGAGCAGGTGCTCGCCGATCCGGTCGCCCGGGCCACGGTGCTCGGCGAACTCGGCTTGCCGAATCAAGACGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCAGGAAGATCATCATGACCGCTACCCTGCTCCCGCAACCCGCTGCCGACATCGCTGAAGACCACGGCATCCTCGACCGCATCATCGCCGAGACTCGCCT CGCGCCCCACGACGAGGGCTATGGCGTGGCCAAACGCGGCATCTCCGCCTTTATCGAAGAGTTGCTCAAGCCGCAAAACGCCCAGCAACCGGTCAAGAAG GCACTGGTCGATCGCATGATCGCCGAGATCGACGAGAAGCTCAGCCGCCAGGTCGACGAGATCCTCCACCACGCGGAGTTCCAGTCGCTGGAGGCGGCCT GGCGCGGCCTGCACCTGCTGGTGGAGCGCACCGACTTCCGCGAGAACAACAAGATCGAGATGCTCAACGTCTCCAAGCAGGATCTGCTGGAAGACTTCGA GGATTCGCCGGACATCGTCCAGTCAGGCCTCTACAAGCACGTCTATACCGCCGAATTCGGCCAGTTCGGTGGCGAGCCGGTCGGCGCCATCATCGCCAAC
Amino Acid Sequence
>type VI secretion protein
MAKEGSVALKERINVTVRPASGGAEEELELPLKLMVLGDFTQRADDRKLEDRKPVAVDKDNFDEVMAKQQLGLTLAVPNRLQDDSQDDLAVQLDLKAMAD FSPARLVQQVPELKQLMDLRDALVALKGPLGNAPAFRRAIEQVLADPVARATVLGELGLPNQDV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site