Pseudomonas oryzihabitans RIT370, UM91_RS05560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas oryzihabitans strain RIT370 contig3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGTGGGCCTGAGCGTGAGACCGCACTTCAAGTACCAGGGCGCCGATTTCACCCTGTCGCTGGTCGGCAAGCTGGACAAGGAGTAACGGCTCATGAGTTAC GGCAGTCTGTTCGAACGCCTGGCTGGTCCGGGCAGCGCGCACAACCGGGGCGCGTCCGCCGACGCCTTGAGCGCCTCGGTGGCCGCCCACCTGGCCAAGA TGCTCAGCACCCGTGCCGGCAGCGTTCCGATCCAGGTCGACTACGGACTGCCCGACCTCAATGACTTGCGGCTGTCGCTGCACGACTCGCTACAGCGTGC GCGGCTGGCCATCGAGGCGTTCGTGGCCGCCTACGAGCCGCGCCTGTCCGATGTGAAGGTGCTGCCGCTGCAGCGGGAAGGCACCACCCTGGCGTTCGCC CTCGAAGGCCAGCTCGAACTCGACGGCCAGCGGTGCCCCATCCGTTTCACCGCGAGCCTAGATGGCAGCGGCCAGGTCAAGGTCAGCCAGGGATAGGTCC
DNA Sequence for Gene
>UM91_RS05560
ATGTCCTTCAATCACTACTACCAGAGCGAGCTGGCCGAGTTGCGTCAGCTGGGCGCGCGCTTCGCCGAACGCAATCCTGCGCTGGCACCCTTTCTGGGCC AGGCTGGTCAGGATCCGGATGTCGAGCGCCTGCTGGAAGGCTTCGCCTTTCTCACCGGTCGGCTGCGGCAGAAGCTCGACGACGAGTTGCCGGAATTGAC CCATTCGCTGCTCAACCTGCTCTGGCCCCATTATCTGCGACCCCTGCCGAGTTGCGCCATCCTCGAATTCGATCCGCTACCAGCATCAGGTGCGGCCATT CAGGTTCCACGTGGAACGGAAGTGGAATCCCGGGCGCTGGACGAGGTGAGCTGCCGCTTTCGAACCTGCTTCGCCACCGCTATCCAACCGCTACGCGTGG ATGAGCTTAGCCTTGCCCAGCAGGGCAGCGGCGCGCGCCTGACGCTGCGCCTGCAGATCACCGGCAACGGCACCCTGGACGCTCTGGACCTGCATCAGTT GCCGCTGCATCTGGCGGGCGATCGCACGCTTAGTCAGGCTCTCTATCTCGCACTGCTGCACAACCTGGCCGGTCTGAGCCTGGTACCCCTGGATGCCGAA CGCCAGCCGCTGACTGACCTCCAGGGCGGCGAACTCGTCCTGCCGCTCGCTCGCGACCAGGTCCAGCCGCTGGGCTTCGGCGAAGACGAGGCGCTGCTGC CCTATCCACCCAATGCCTTCCGCGGCTATCGCCACCTGCAGGAATATTTCGCCTTTCCGGAGAAATTCCTCTTCGTCTCGATTCAGGGAATGACGAAGCT GAAGCAACTGGCAGACCCGGTGCGCCGCCAGATCCGCGGGCTGGAGGTGCGCTTCGACATCGCCCGGATCGCCCGGCAGCCGCGGCTTCCCAGTCGCGAC AACCTGCGCCTGCACTGCGTCCCGGTGGTCAATCTGTTCCGCCATGACGCCCTGCCGATCCGCCTCGACGGCAAGCGCGACGAGTACCCGTTGTTTCCGG CCGGCCACGGCCGCGAACACCTGGGGGTCTTTGCCGTGGAGCGGGTGACCGGCTGGCAACCGGGCGGCCTGGGCCATCGTGACTATCTACCCTTCGAATC CTTTGCCCACGACCTGAGCTTCGGCGGCCAGAGCCGTCGGCCGCACTATGCCGTACGCCAGCGCAGTGCCCTGCTGCACGGCGGCATCGATACCTATCTG GCGTTTGGCGATCCGGGTACCGATCAGGACACCCTGTCTATCGAGCTGACCTGCACCAACCAGAACCTGCCCCAGCGCCTGCGCGCCGGTGATCTGTGCC TGCCCACCGAAAATACCCCGGGTGGTCTGGGCTTTCGCAATCTGGCCGCCCCAACTGCCTGTCATGCGCCGGTGCTGTCCGGCAACCGGCTGTGGCAGCT GGTTTCCAATCTATCGCTCAATTATTTGTCGCTCACCGATGTCGCGGCCCTGCGTACGGTGTTGGCCAGTTACGACCTGCCCAGTCAGCACGACCGGCAG GCCGAGCGCATCAGTCACCAGCGCCTGGCGGCCCTGCAGGGCATCAGCCATCGCCCGGTGGATCGCCTCTACCGGGGCCTGCCGATCCGCGGTATCGCCA CCCAGCTGGACATGGATGCCAGCGGCTTTCGCAGCGAGGGCGAGCTGTACCTGTTCGCCAGCGTACTCAACGAGTTCTTCGCGCTCTACGCCAGCCTGAA TTCCTTCCATCAACTCAGCGTTCGCAGCCTGCAGGGAGAGGTTTATCTATGGACACCGCGCATGGGTCAGCAGCCGCTGATCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATCGCTCGGCGCTGTGCCGCGAGATTCGCGAGTACTCGCTTTTCCAGGGTATCGGACAGGTGCTCCTGCAGTTGCAGGGCCTGATGCCGAGTCTCTCGGA GGAGCAGCTCTATGAACGGCTGGAGTTCCATGCCAACCCCAGCCTGGCCTTTCCGGGTAGCGATATCGAGCGCCTGCACTTCGTCGAGGACGCCGATGGG CTGCGCGCCCGCCTGCAACTCAACCTGGGCGCCCTGATGGGCAGCGGTTCGCCGCTGCCGGCCTTCTACAGCGAACAGGCGCTGAGCGATGGCGAACAAG GGCGTACCACCCGCGACTTCCTCGACCTCTTCAATCACCGGCTGCACCGGCTGCTGCTGCCGATCTGGCGCAAGTATCGCTATCACGCCCGCTTCCGAGA GGGCGCGCGTGACGAGTTGTCGGCCCGGCTGTTCAGTCTGATCGGCCTGGGCGACAGCAGCCTGCGCCAGGCGCCGGAGCTGAACTGGAAACGCCTGCTG
Amino Acid Sequence
>type VI secretion protein
MSFNHYYQSELAELRQLGARFAERNPALAPFLGQAGQDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLLNLLWPHYLRPLPSCAILEFDPLPASGAAI QVPRGTEVESRALDEVSCRFRTCFATAIQPLRVDELSLAQQGSGARLTLRLQITGNGTLDALDLHQLPLHLAGDRTLSQALYLALLHNLAGLSLVPLDAE RQPLTDLQGGELVLPLARDQVQPLGFGEDEALLPYPPNAFRGYRHLQEYFAFPEKFLFVSIQGMTKLKQLADPVRRQIRGLEVRFDIARIARQPRLPSRD NLRLHCVPVVNLFRHDALPIRLDGKRDEYPLFPAGHGREHLGVFAVERVTGWQPGGLGHRDYLPFESFAHDLSFGGQSRRPHYAVRQRSALLHGGIDTYL AFGDPGTDQDTLSIELTCTNQNLPQRLRAGDLCLPTENTPGGLGFRNLAAPTACHAPVLSGNRLWQLVSNLSLNYLSLTDVAALRTVLASYDLPSQHDRQ AERISHQRLAALQGISHRPVDRLYRGLPIRGIATQLDMDASGFRSEGELYLFASVLNEFFALYASLNSFHQLSVRSLQGEVYLWTPRMGQQPLI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site