Pseudomonas oryzihabitans RIT370, UM91_RS05555

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas oryzihabitans strain RIT370 contig3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACCTGCACCAACCAGAACCTGCCCCAGCGCCTGCGCGCCGGTGATCTGTGCCTGCCCACCGAAAATACCCCGGGTGGTCTGGGCTTTCGCAATCTGGCCG CCCCAACTGCCTGTCATGCGCCGGTGCTGTCCGGCAACCGGCTGTGGCAGCTGGTTTCCAATCTATCGCTCAATTATTTGTCGCTCACCGATGTCGCGGC CCTGCGTACGGTGTTGGCCAGTTACGACCTGCCCAGTCAGCACGACCGGCAGGCCGAGCGCATCAGTCACCAGCGCCTGGCGGCCCTGCAGGGCATCAGC CATCGCCCGGTGGATCGCCTCTACCGGGGCCTGCCGATCCGCGGTATCGCCACCCAGCTGGACATGGATGCCAGCGGCTTTCGCAGCGAGGGCGAGCTGT ACCTGTTCGCCAGCGTACTCAACGAGTTCTTCGCGCTCTACGCCAGCCTGAATTCCTTCCATCAACTCAGCGTTCGCAGCCTGCAGGGAGAGGTTTATCT
DNA Sequence for Gene
>UM91_RS05555
ATGGACACCGCGCATGGGTCAGCAGCCGCTGATCTGAATCGCTCGGCGCTGTGCCGCGAGATTCGCGAGTACTCGCTTTTCCAGGGTATCGGACAGGTGC TCCTGCAGTTGCAGGGCCTGATGCCGAGTCTCTCGGAGGAGCAGCTCTATGAACGGCTGGAGTTCCATGCCAACCCCAGCCTGGCCTTTCCGGGTAGCGA TATCGAGCGCCTGCACTTCGTCGAGGACGCCGATGGGCTGCGCGCCCGCCTGCAACTCAACCTGGGCGCCCTGATGGGCAGCGGTTCGCCGCTGCCGGCC TTCTACAGCGAACAGGCGCTGAGCGATGGCGAACAAGGGCGTACCACCCGCGACTTCCTCGACCTCTTCAATCACCGGCTGCACCGGCTGCTGCTGCCGA TCTGGCGCAAGTATCGCTATCACGCCCGCTTCCGAGAGGGCGCGCGTGACGAGTTGTCGGCCCGGCTGTTCAGTCTGATCGGCCTGGGCGACAGCAGCCT GCGCCAGGCGCCGGAGCTGAACTGGAAACGCCTGCTGCCCTATCTCGGCCTGCTCAGCCTCAAGGTGCATTCGGCGACGCTGATCGAAGCGGTGCTGCGC TATTACCTGGAGCAGCCCGAGCTGCAGCTGGAGCAGTGCCTGGAGCGCGCAGTGGTCATTCCCCCAGAACAACGCGCGCATCTCGGGCGGGCCAGCGCCC AGCTCGGAGAGACAGCCGTCCTGGGTGTGCAGGTGCGCGATCGTGGCGGCAAGTTTCGCCTGCACGTGCTCGAACTGGACTGGGAAGCCTTTCATTCATT CCTGCCCGGGGGCAGTCGGTACGCCGCCGTGCGTGCCTTGCTGAATTTCACCCTGCGCGACCAGCTGGACTACGACCTGCGCCTGCATCTGCGGCGGGAC GCGGTGCGGCAATGGCGGCTGGAAGCCGCCCGCCCCCGCCGTCTCGGCTGGGCCACCTGGCTCGGCCCCCGCCGAGCTAAGGGTCAGGTCACCCTGGCCT GCCACCGTTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCAAGGACGATCAACATGCTCACCCTGGACCTGAACCTCCTTATCAACAGCCTTTCCGTGACCGCGCGCCAGGACCTGGAACAGGCGGCGCAGCGCTGCG TCCGTCGAGGCGGGCGGCACATCCTGATCGAAGACCTGCTGGCGGTCCTGCTGGAATCCCGCGACGGACTGCTCACTCGCGCGCTGAAAGCGGCTGACCT GGACCCGGTGGATTTCGCCGCGACGCTGCAGCCACGCCAGCGCAATGGAGAAGGCGGCGACCCGGTCTTCGATCCTGCACTGCTGCTGTGGCTGCAGGAT GCCGTGCTGCTCGCCCGTCTCGAACTGGAACAGGCTGAGACCGATAGCGCGGCCCTGCTGCTGGCGTTGTTGCGCCATCCCGAGCGGCTGTTGGGCACAG GTTACGGTCGCCTGCTGGAGCGGGTGGATGCCGCGCAGCTCCTGGACTTCGTCAGGGCTCAGCGGCCCGAGGGGTCACCGGTCATCAGCGAGTCCCCTCT
Amino Acid Sequence
>type VI secretion protein
MDTAHGSAAADLNRSALCREIREYSLFQGIGQVLLQLQGLMPSLSEEQLYERLEFHANPSLAFPGSDIERLHFVEDADGLRARLQLNLGALMGSGSPLPA FYSEQALSDGEQGRTTRDFLDLFNHRLHRLLLPIWRKYRYHARFREGARDELSARLFSLIGLGDSSLRQAPELNWKRLLPYLGLLSLKVHSATLIEAVLR YYLEQPELQLEQCLERAVVIPPEQRAHLGRASAQLGETAVLGVQVRDRGGKFRLHVLELDWEAFHSFLPGGSRYAAVRALLNFTLRDQLDYDLRLHLRRD AVRQWRLEAARPRRLGWATWLGPRRAKGQVTLACHR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site