Pseudomonas oryzihabitans RIT370, UM91_RS02615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCGCCACCGTCGCCATCGCGCGGGTCATGCGCTATCTGCGTCGGTTGTTCCTGGTGCTCGACGCCCTGGGCCTGGTGGCCTTTACCGTGATCGGCTGC CAGGTGGCCCTGGAAATGGGCCTGAGTCCGGCCATCGTCATCGTCAGCGGCACCCTGACCGGCACCTGCGGCGGCATCCTGCGCGACATCCTCTGCAACG ACGTACCCCTGATCCTCAGGCGCGAGCTCTATGCCAGCGTGGCGGTACTCTCCGCCGGCTGCTACCTGCTCTGCCGCCCGTGGCTCGGCGAAGAGCAGGC ACTGCTCATCACCCTGGCCGCGGGGCTGCTGCTGCGCCTGCTGGCGCTGAGATTCAACTGGCAGATGCCGACCTTCACCTATCCGGACGATCCCCACGGC TAAGGCCGTGACGATTTACGCGGTGTCGCGCTGAAAGGCTTGTCCTAGAGCCTTTTGTGCGGCATTTTTCAGGCCCCAGTTACCGATAGGGAGATCGGTC
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| DNA Sequence for Gene |
>UM91_RS02615
ATGTCTGGAAAGCCCGCTGCTCGCCTGGGCGACGCCGTCGCCTGCCCCAAATGTGGTTCCACCGCCCTGGTCCAGGGCTCCGCCGATGTCACCTTCGATG GCCTGCCCGCCGCGACCCTCGGCCATGCCTGCGGCTGTGGCGCGGCCCTTAGCGCCGCGGTCATCCCCAACGTCCTGATCAACGGCCGGCCTGCGGCGGT GCTCGGCAGCCTCACCAGCCATGGCGGCGTGGTGATCGGTGGTTCCGGCACCGTCATCATCGGCCTGGACGCAGGCGGCGCGGCCAAGGGCGCCTGCGCA AGCCATGCAGGTGCTACCGGCCTGGCACCGGGGCAGGGCAAGCCTGCGGCGCTGCGCGACCGGGAGCGACAGGGCAGCGAGGGACTGGCCAAGCGCCAGG ACAGCGCGCCCGTCGCCAGGGATGAAGTCGCCGAACAGGCGGAGCGCCCGCTAGAACAGCGCATCACCCTGCGCATCGGCGTCTTCTTTGACGGCACCGG CAACAACCTCTTCAACGCCGCCACCGGCGCCGCCTGCCGGGCGGAAGAGCAGGGGTTTCGCCAGGATCAAGCGCGCAGCATCGCAGAGCATTGCGAGAAG TTCATGCTGAGTGCCGATGGCAGCTATGCCGGGGCGGAGACGAATATCGCGCGGCTATTCAGACTGTATAAAAACGATGCCACACGCGTGCTCGAGGGCG ACGAGTCAACAGCCACACTTCGTATATACATTGAAGGTATTGGCACCCGTGCCGGCCAGGCAGATAGCCTATTTTCAATGGGTACTGGCCTAGGAGCTAG TGGCGTCCTTGCTTGTGTTCAGACGTTCCCGAAAGCCTTTGGAGAAAGCTATGACCAATTCAAACGAAACAATCCCAACGTAACTGTTGAAGCTATTGAT TTCGATCTTTTTGGTTTTAGCAGAGGAGCAGCCGCAGCGCGGCATTTCGCCAATGAAGTGCTCAAGGTGGATGGCGGTATCGCAGCTACAGGACTGTTGC CGTGTTTTTCCTGGCAGCGCGCCAGGGCAAGACTCAACTTTATCGGTTTGTTCGATACCGTGGCAGCGATCGCCGATCCGCTGCGGGGCGATTTCAGTCC GGCCAATGCAGTAAATCCTGGGCTCAATCTTTATTTACCATCCGGTTGCGCGCTCAAGGTGGTGCAATTGACTGCCCAGCATGAATTCCGCCGTAACTTC GCCCTGACCAGCGTGGCACCTGAACACGCAGAGATCCTCTTGCCTGGTGCCCACGCTGATATTGGTGGCGGCTATCCTGCCGAGATACAGGAACGATTGC TATTGACCCGGCCGAGGGCTTCCCGTGAGCCCCAGGGCACGGATAGCCACCAGGCCTGGAGCTATCGTCAGGCCGAACTGGAGTTACGACACCTGCAAGG GGCGCCCTGGTACGACTCAGCCAGCACTCGTCTCGGCATCGATACCTGGCGCCTCGAGTTACCTCGCGTCCGAGGCGACCTGCCGGAAATCGAGGTTTTC GCCGCGATACGGCTGGAGCGGCAGGTGCGTGGAGAGCTATCCCTGGTTTATCTGCGGATTATGCACCGTCTGGCCAGCGCCCAGGGTGTGCCCTTCATGG CTCTTGACGAAGAGGATCCGGAGTGGCGCTTGCCGGCCGACCTGGTTCCTATAGCCGGCAAGCTTCAGGCAGGCGGTCCGCATGCGCCTGAGCCACTGAG CCAGGCCGAAAATCGTCTGCTGCTCAGTCGCTATGTGCACAGATCCGCCCATTGGAATGCGCGTGTGGGTAGTGGCCTGGGCAATGTGGATGCAATCTTC GTCGATGCCCCTACCGCCGATGGTCGGCGCAGCCTCTATCCCAATCGTCCCCAAGCGGGGTACCCGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGCTGGCTGCTATCTATCGTCCTGCTACTGGGCCTGGCAGGTTGTCAGTCTGACGCCGCGAACAAGCTGCCCTATGACGCCTGGTACCTGGGCTTTCT GGCGCCCAACTACATGGAGGTCTGGCTGGAGCAGGCCAATATTGGCGACAACAGTGGACGCATCTTTCCCAATGCTATGGGGGGAGTGGTCGCCATGGGT GAGCCAGCCAGCCTATCGGCTACCGCCAAGGGCTGGCCTAAAAGGATCGGCTCCGGTGCCGGCCGTACCCTAACCGGCTTAGACCTACCTTACGTCGTCT CCTTACGCTGGCAATCCATGGTCGAGCCCCAAACCTATCACGCGCTGTTCACCATTCCTGATTGGGCCAGGGAAAAGATGGTCGAGCGTCTGCCAGCCGA GTGTCCGGTCAGTGGTCGCACTTCGGATTATCGCAAGGACCTCACCATCGGCCTGGCGCCCGGCGGGGTGGTCAAGGTCTGGATCATGGGCCCCTGTCTC
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| Amino Acid Sequence |
>hypothetical protein
MSGKPAARLGDAVACPKCGSTALVQGSADVTFDGLPAATLGHACGCGAALSAAVIPNVLINGRPAAVLGSLTSHGGVVIGGSGTVIIGLDAGGAAKGACA SHAGATGLAPGQGKPAALRDRERQGSEGLAKRQDSAPVARDEVAEQAERPLEQRITLRIGVFFDGTGNNLFNAATGAACRAEEQGFRQDQARSIAEHCEK FMLSADGSYAGAETNIARLFRLYKNDATRVLEGDESTATLRIYIEGIGTRAGQADSLFSMGTGLGASGVLACVQTFPKAFGESYDQFKRNNPNVTVEAID FDLFGFSRGAAAARHFANEVLKVDGGIAATGLLPCFSWQRARARLNFIGLFDTVAAIADPLRGDFSPANAVNPGLNLYLPSGCALKVVQLTAQHEFRRNF ALTSVAPEHAEILLPGAHADIGGGYPAEIQERLLLTRPRASREPQGTDSHQAWSYRQAELELRHLQGAPWYDSASTRLGIDTWRLELPRVRGDLPEIEVF AAIRLERQVRGELSLVYLRIMHRLASAQGVPFMALDEEDPEWRLPADLVPIAGKLQAGGPHAPEPLSQAENRLLLSRYVHRSAHWNARVGSGLGNVDAIF VDAPTADGRRSLYPNRPQAGYPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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