Pseudomonas oryzihabitans RIT370, UM91_RS17490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCCAGGTCCCCATCATCATGCTTACCGCCAGTTCCGACGAAGCCGATCGGGTGATCGGCCTGGAGCTGGGCGCCGACGACTACCTGGGCAAGCCCTTC AGTCCGCGTGAATTGCTGGCACGCATCAAGGCGCTGCTGCGCCGGGCCGGCTTCGGCGAGACGCGCCCGGCGGCCACCGGTCTGCTCACCTTCGACGACT GGCGCCTGGATCCGGTCAGCCACCGGCTGTTCCATCGCGACGGTGAGGAGGTGATCCTCTCCGGCGCCGATTTCACCCTGCTCAAGCTATTTCTCGACCA TCCCCAGCAGATCCTCGATCGCGACACCATCGCCAATGCCACCCGCGGGCGCGAGGTGCTGCCGCTGGAGCGCATCGTCGACATGGCGGTGAGTCGCCTG CGCCAGCGCCTGAGAGACACCGGCAAGTCGCCGCGGCTGATCCGCACCGTACGGGGTTCCGGCTATCTGCTCGCCGCCGAGGTCAGCGGACTGGTCGCCG
|
|
| DNA Sequence for Gene |
>UM91_RS17490
ATGCGGTGTAGCGGTCTGCTCGCGCGGCTGGTGCCGCGTTCCCTGTTGGCGCGGATGCTGCTCCTGACCCTGCTGGCGGTGCTCCTGGCCCAGGGTGCCT CGGCACTGTTCTGGTCCGCCTCCCTGCGCAGCGACCGCAACCAGGGCCTGCAGACCGCCGCCCGCAGCCTGGGCTATTCCATCGCCGCCAGCGTGCGCTA CTTCAGCCTGCTGCCGCCGGCCTATCGGCCGCTGGTGCTGGAGCAGTTGCGCAACATGGGCGGCACGCGCTTCTTCGTCTCGCTCAATGAAAAGCCGCTG ACCATGCAGGCGCTGCCGGATACGCCCGGCCGCCGGGCGGTGCTCCAGGGGGTCGAGGCGGTACTGCGCGAACGCCTGGGCGCGGCCATGCCCATGTACG TCGAATTCATCGGCCCGCAGCAGCTGCGGCTGTTCAACGGCGCCGTGGCGCTCGACGAACTGCCGCGCTCCTGGGCGCACTACGCCCTGAGTCTGGAGCC GCTAGAGCCGCCGGTGCTGGTGACCCAGATCCGCATCGGCGAAGGGGAGTGGGTGTATCTCGCCACCCTGATGCCGGCGCCCTACTACAGCCTGGACGAG TCCTGGCTGCCGCTGCAGCAGCTGCTGTTCATGGTCTTCAGCAGTGCCTTCCTGCTGCTGTTCATCGGCCTGCTGATCCGCTGGCAGAGTCGCCCGCTCA AGCGGCTGTCGCGTGCCGCGCGAGAGCTGTCGCTGGAGGTGCATACGCCGCCGGTGCGCGAGGAGGGCGCCCAGGAGATCCGCGAGGTCACCCGCGCCTT CAACGCCATGCGTGAACGCATCGCCCGTTACCTGGACGAGCGCGCCCAGCTGTTCAGCGCCATCTCCCACGACCTGCGCACGCCCATTACCCGGCTGCGC CTGCGCGCCGAGCTGGTGGACGACGAGGTGATGCAGGCCAAGCTGGTGCGCGATCTCGACGAGCTGGACCTGCTGGTCAAGGGCGCCCTGCAGTGCGTCA AGGACACCGACATCCACGAGAATCTGGAGCCGGTCGACCTGCAGGCGCTGCTGCTGCAGCTGGTGGAGCCCTTCACCCAGGAGCAGCCACCGCGGGTGCG CCTCACCGGGGAAGCCCAGGGCACCCTGCTGGGCAAGCCGCTGGCGCTGAAACGCTGCATCGGCAACCTGCTGGACAATGCCCTCAAGTATGGCTATCGC GCCCACCTGCAGGTGGAAAACGACGGCCAGGCCTTCGTCCTGCATGTCGACGACGAAGGCCCGGGAGTGCCGGAGCAGGAGCTGGAGCAGGTGTTCCAGC CCCATGTCCGCCTGGCCACCGACCGCCAGGGTTACGGCCTGGGCCTGGGCATCGCCCGCAACCTGGCCCATGCCCATGGTGGCGAGGTGGAGCTGCGCAA CCGCCGCGAGGGCGGTCTGCGGGTCACCCTGACCTTGCCGCGCAGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCAGAGCGGCTGATAAAACTACTGCGCGTCCGCCAGGCAGGCGCGTGCAGTGCTCGGAATCCTCATGTACCGCTTGTACACTGCGGTTCCTGCGCGCCG CGCGCGCCCGCCTGCCAACCGCTCGCTACGTTTTCTCACCGCTCTGACTCCTGCGCTATGTCACCAGCCCGTGACAAATCTCCTTCCCTTCGTTACCCAC GGCCGCAGTCGTCTGACTAGACTCGGCCCAGCTCCATTAAAAAAACAACAAGGAACGACCCCCTCATGAATGCGTTGAATCGTCTCGCTCTCGCCGTATC CCTTTCCTGCGCCGCGCTCGCCGCCCCCCTGACCGCCCATGCCGGTGAGGTCGAGGTGCTGCACTGGTGGACCTCCGGTGGCGAGGCTCGCGCCGTCGAT GTCCTCAAGCAACTGATGCAGAAGCAGGGCGATACCTGGAAGGACTTCGCCGTGGCCGGTGGCGCCGGCGAGGCCGCCATGACCGTGCTCAAGACCCGCG
|
|
| Amino Acid Sequence |
>histidine kinase
MRCSGLLARLVPRSLLARMLLLTLLAVLLAQGASALFWSASLRSDRNQGLQTAARSLGYSIAASVRYFSLLPPAYRPLVLEQLRNMGGTRFFVSLNEKPL TMQALPDTPGRRAVLQGVEAVLRERLGAAMPMYVEFIGPQQLRLFNGAVALDELPRSWAHYALSLEPLEPPVLVTQIRIGEGEWVYLATLMPAPYYSLDE SWLPLQQLLFMVFSSAFLLLFIGLLIRWQSRPLKRLSRAARELSLEVHTPPVREEGAQEIREVTRAFNAMRERIARYLDERAQLFSAISHDLRTPITRLR LRAELVDDEVMQAKLVRDLDELDLLVKGALQCVKDTDIHENLEPVDLQALLLQLVEPFTQEQPPRVRLTGEAQGTLLGKPLALKRCIGNLLDNALKYGYR AHLQVENDGQAFVLHVDDEGPGVPEQELEQVFQPHVRLATDRQGYGLGLGIARNLAHAHGGEVELRNRREGGLRVTLTLPRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|