Pseudomonas oryzihabitans RIT370, UM91_RS16635 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTGGGCCTGAGCCTCCGCCAGGGGCGGGTTGCCGGCCAGCCAGAACCTGACGTCCTGGGGCGGTAATTCGGCGAGCTGCTCGGGCTGGCCGCGTTGCA CCCGGCTGCCGAAGTGCTGCAGGTAAGCCGCCGCCAGCGCCTGGGGATCGGTGCTGCGGGTGGTCGCGGCGAGTTGGGTGGCGAGCTGGCGCGCGGTCCG GCTGTCGAGTCCCTGATGGGTCAGGCGCAGGCTGGCCGGGCCACTGTCGGTCTGTGGCGGCAGAGGGCAGGACAGCGGCTCCTGCTGCGCGAGGCAGGCC AGCGACAGGGTCAGTGCCCAGACGGCGGCGCCCAGGCGTACGCCGATACCTCGGCACCTGGAGCGAACGGAGAGCCGATCGACTGAACGCATGGGAAGGG AGGATACGCGGAAGACGGACGCCAGAGCCTAGCGGGTGCGGGCGCCCGGGAGCAAGGCGCGCGACGATGCTAGACTGCGCCGATTCTAGGGGAGGGCGGT
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| DNA Sequence for Gene |
>UM91_RS16635
|sbcB
GTGACGCAAAGTATCTTCTGGTACGACTTCGAGACCACGGGCATCGATCCACGGCGGGATCGTCCGCTGCAGGTGGCCGGGGTGCGTACCGATCTGGACC TCAACGAAATCGAAGCGCCGCTCAATCTGCATTGCCAGCTGAGCGAGGACGTCCTGCCCCATCCGGCAGCCTGCCTGGTCACCGGTATCCTGCCCGCCAC CCTGCAGCGCCTGGGGCTGCGCGAGCGGGACTTCGTCCAGCGTCTGCATGAGGAGCTGCGGCGTCCCAACACCTGCAGCGTCGGCTACAACAACTTCAGA TTCGACGACGAAATGGTACGGCACAGCCTGTACCGCAACTTTCACGACCCCTATGCCCGCGAGTGGCAGCAGGGCAACAGTCGTTGGGATGTGCTTGGCC TGGTCCGGGCGCTCTATGCCTTTCGCCCGGAAAGCCTGGACTGGCCGCAGGACGAGCAGCGCGTTTCCCTGCGCCTGGATCGCCTGACCGTCGCCAATGG CATCGAGCACGCCCAGGCCCATGACGCCCTGGCCGATGTCCGCGCGACCCTGGCCCTGGCGCGCCTGGTCAGGCAGCGGCAGCCAAGGCTCTATGACTAT CTCTGGACGCAGCGCCAGAAGAAGGCGGCGCTGGCGCGCATTCGTCTGCTCGAACCCCTGCTGCATGTCTCGGGACGCTTCAGCGCCGAGCGGCACTTTC TCGCCCCTGTCCTGCCGCTGGCCTGGCATCCGGTCAATCGCAATGCGTTGATCGTCTGCGACCTCGGCCTGGCGCCGGAGCCGCTGCTGGACCTGGACGT CGAGACCCTGCGCGAACGCCTCTATACCCGGCGGGATGCGTTGGCCGAGGGTGACCTGCCGGTGCCGCTCAAGCTGGTACAGATCAACAAATGTCCGATT CTGGCGCCTTTCAGCGTCTTGCGTCCGGCGGACACGGAACGGCTGCAATTCGATCTGGCGGCCGTCTGGCGCCGCGTCCGCCAACTGCTCGACCAGCGTG CGACCTGGCAACCCAAGGTGCAGGCCCTCTATGCCGAGGCATTCGGATTTGCCGCCCAGGAACAGGAGGCCGAAGCAAGACTGTACGACGGCTTCATTGC CGCCGAAGAACGGCAACTCTGCGACCAAGTTCATCAATGTCCGGCGGAGCAACTTGGCAGCCGCGCCTGGCCCTTTCGGGATGAGCGACATCCAGAGCTG TTCTTTCGCTATCGAGCGCGCAACTTTCCCGAGTTGCTGACGGCGGAAGAAGAGGCTCGTTGGCGACAATTCTGTCGGCAGCGTCTGCTGGGTGAAGAGC AACAAGGTCATATGACCTGCACGCAGTTCCTCACCCTGACCGAACAATTGCGGCGAGAAGTCCCGGTTGATCAGGTGCCGATTCTCGAGGCCTGGTCCGC TCATGTTCGAGCGGTGATGCAGCGATTGGATCGGGCGGTTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGTCGCAAAAGCCGGATACCGATCCGAGACGTTTGTTAACCAAAAAAGAGTGGCAAGCAGCAAATTCGGACGGACGCTATCCGACCGCGGTTGAAGCAAG GGACAAGTGATAGGGAAGTACCGCGCCGGAGATGAAAGCGCTTCGGGCGCTGTGGTGCGGGGTATCGATAACGGCGAGCGGTCACCAGGCCTAACCTGGG GCCGCGCCTGGCAGGCTGCGGTAAACGCCTGCCAGGCGGGCAAAAAAAAACGCCGGCTGGCCGGCGTTCTTCTGATCAATCCAGCAGCGTTGCCCAGGAT TCGACGTCGTCCGAACCCCATTTGGCTTTCCACTCTTTCAGCGTCTTGTGATTGCCACCCTTGGTTTCGATCACTTCGCCATTGTGCGGATTCTTGTATT GCTTAACTTTGCGCGCGCGCTTGGGCGTACTGCCACTGCTGGCCTTGGGAGTGCGCGCCTGGCGGGCAGGCTTGGCTTCGGTATCGAGAATGCCGATGAT
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| Amino Acid Sequence |
>exonuclease I
MTQSIFWYDFETTGIDPRRDRPLQVAGVRTDLDLNEIEAPLNLHCQLSEDVLPHPAACLVTGILPATLQRLGLRERDFVQRLHEELRRPNTCSVGYNNFR FDDEMVRHSLYRNFHDPYAREWQQGNSRWDVLGLVRALYAFRPESLDWPQDEQRVSLRLDRLTVANGIEHAQAHDALADVRATLALARLVRQRQPRLYDY LWTQRQKKAALARIRLLEPLLHVSGRFSAERHFLAPVLPLAWHPVNRNALIVCDLGLAPEPLLDLDVETLRERLYTRRDALAEGDLPVPLKLVQINKCPI LAPFSVLRPADTERLQFDLAAVWRRVRQLLDQRATWQPKVQALYAEAFGFAAQEQEAEARLYDGFIAAEERQLCDQVHQCPAEQLGSRAWPFRDERHPEL FFRYRARNFPELLTAEEEARWRQFCRQRLLGEEQQGHMTCTQFLTLTEQLRREVPVDQVPILEAWSAHVRAVMQRLDRAVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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