Pseudomonas oryzihabitans RIT370, UM91_RS02260

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00187
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00187
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003916 DNA topoisomerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01897
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006259 DNA metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.199.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00187
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00187
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 30 523 0.0
SMART SM00434 topIV4 IPR002205 DNA topoisomerase, type IIA, domain A 11 500 0.0
CDD cd00187 TOP4c IPR002205 DNA topoisomerase, type IIA, domain A 30 510 0.0
Hamap MF_01897 DNA gyrase subunit A [gyrA]. IPR005743 DNA gyrase, subunit A 1 890 24.016991
Gene3D G3DSA:1.10.268.10 Topoisomerase, domain 3 IPR013757 DNA topoisomerase, type IIA, alpha-helical domain superfamily 371 493 0.0
Gene3D G3DSA:3.30.1360.40 - - - 236 334 0.0
Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat 539 586 4.1E-8
Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat 842 888 6.8E-13
Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat 591 639 1.1E-7
MobiDBLite mobidb-lite consensus disorder prediction - - 911 925 -
Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A IPR002205 DNA topoisomerase, type IIA, domain A 32 507 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 905 943 -
FunFam G3DSA:3.90.199.10:FF:000001 DNA gyrase subunit A - - 32 296 1.9E-113
Gene3D G3DSA:3.90.199.10 Topoisomerase II, domain 5 IPR013758 DNA topoisomerase, type IIA, domain A, alpha-beta 32 522 0.0
NCBIfam TIGR01063 JCVI: DNA gyrase subunit A - - 8 638 0.0
FunFam G3DSA:3.30.1360.40:FF:000002 DNA gyrase subunit A - - 236 334 5.8E-42
Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat 742 786 4.2E-14
Gene3D G3DSA:2.120.10.90 - IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal 532 890 3.6E-125
PANTHER PTHR43493 DNA GYRASE/TOPOISOMERASE SUBUNIT A - - 4 896 0.0
Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat 694 737 1.0E-9
Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat 792 837 1.4E-9
SUPERFAMILY SSF101904 GyrA/ParC C-terminal domain-like IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal 534 897 8.5E-100

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.