Pseudomonas oryzihabitans RIT370, UM91_RS00435 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCACGCATGACGAAGGTGATGTATTTAAGGGTGACCACCCAGATGAGCGACCAGAAGATCAGCGACAGGATGCCGAGCACACTGTCGTGATTCAGCG GCAAGCCGTAGTGCGGCGAAAAGACTTCCTTGAGGGTATAGAGAGGACTGGTGCCGATGTCGCCGTATACCACACCGGTGGCGAGCACGATCATTCCCAA GGCCGAAGGGGCTTTACCACCGTGCTCGTGTTCCGGACGGCTCATGCAGGGCTCCTAGAGTCTAAAATCGGCGCATCCTGCGCCGAAGCGGCGTCAGGAT CAAGTTGAAAAGGCCGGTAGCGTGGCGCGCGCAACCTCTCAGCGCAGCGCTTCCAGCACCATAGACTCCTTGGTCGGCAAAAAGCTCTGCGCGGTCTCCA GGACCTGCCTGCCCCTTCCAAGCAGCGGCAGAGATGGCTAGAATCGCGCGTTTTTTGATCAAGGCGCCTCCTGAGCGCCCGCCGAGGTTAGCCCATGTCC
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| DNA Sequence for Gene |
>UM91_RS00435
|rimO
ATCCAAACGTCCGCCCCCAAGGTCGGTTTCGTCAGCCTCGGCTGTCCCAAGGCCACCGTCGACTCCGAACGCATCCTCACCCAGCTGCGCATGGAAGGCT ACGAGATCGTGCCGACCTATGAAGACGCCGACGTAGTGGTGGTCAACACCTGCGGCTTTATCGACAGCGCCAAGGCCGAGTCCCTGGACGCCATTGGCGA GGCCATCGCCGAGAACGGCAAGGTGATCGTCACCGGGTGCATGGGTGTGGACGAGGGCAACATCCGTGGCGTGCATCCCAGCGTGCTGGCGGTGACCGGT CCGCAGCAGTACGAGCAGGTGGTCAGCGCCGTGCACGAGGGGGTCCCGCCGCAGCTGGAGCACAATCCGCTGATCGATCTGGTGCCGCCCCAGGGCATCA AGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCCTCCATGCGCGGCAAGCTGGTCAG CCGCCCGGTGGGCGACGTGCTGTCCGAGGCCGAGCGCCTGGTCAAGGCCGGCGTCAAGGAGCTGCTGGTGATCTCCCAGGACACCAGTGCCTACGGCGTC GACCTCAAGTACAAGCTGGACTTCTGGAACGGCCAGCCGGTCAAGACGCGCATGCTGGAGCTGTGCGAGGCGCTGTCGGGCATGGGCGTCTGGGTGCGCC TGCACTATGTCTACCCCTACCCCAATGTCGACGACGTCATTCCGCTGATGGCCGCCGGCAAGCTGCTGCCCTACCTGGACATCCCCTTCCAGCACGCCAG CCCCAAGGTGCTCAAGTCCATGAAGCGCCCGGCGTTCGAGGACAAGACCCTGGCGCGCATCAAGCGCTGGCGCGAGATCTGCCCGGAGCTGACCATCCGC TCTACCTTCATCGTCGGCTTTCCCGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTCACCGAGGCCCAGCTCGATCGCGTCGGCTGCTTCC AGTACTCGCCGGTCGAGGGCGCACCCGCCAACGAGCTGGGCCTGGAGCCGGTTGCGGACGAGGTCAAGCAGGAGCGCTGGGAGCGCTTCATGGCGCACCA GCAGGCCATCTCCGCCGCGCGCCTGCAGCTCAAGATCGGTCGCGAGATCGAGGTGCTGATCGACGAGGTGGACGACCAGGGCGCCATCGGCCGTTCCTAT GCCGATGCCCCGGAAATCGACGGCAACGTCTATGTCGACAGCGCCAATCCGCTGAAGCCGGGTGACAAGGTGTGGGTGCGGGTCACCGACGCCGACGAGT ACGACCTCTGGGCAGAGGCGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCTAGCTAGTCATGCAGGCGGTGGGTGCCGGGCACATGGGCGTGCCCGGCCGCACTGCAGCTGGCGGTCGTCGCCGACGGCGCCGCCGGCTGACCGAG TTCGCGCAGGATGCCGCAACGGTCCCCTTCGCCCTCTCCCTGGCAGTGGCGCCTCAGGGTCACCAGCTGTTCACGCAACTGATTTAACTCGCGGATACGC ACCTCGACATGATGCAGATGGGCGCCGATCAGGGCGTCCACCTGGGCGCAGCCGGGTTCGCGGGTATCACGCAGGGCCAGCAGGGCACGAATCTCTTCCA GCGTCATGTCCAGCGACCGGCAATGGCGAACGAAGACCAGGCGCTCGACCTGGCTTTCGTCATAGCTGCGGTAGTTGCTGCTGCTGCGCGCCGCCGGACT CAGCAGCCCTTCGCGCTCGTAGTACCTGATGGTCTCGACGGCGCAATCGGTGCGCCTGGCCAATTCGCCGATCTTCATCATCCTGTCTCGTTGAGCTGAG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MQTSAPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYEDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVDEGNIRGVHPSVLAVTG PQQYEQVVSAVHEGVPPQLEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGV DLKYKLDFWNGQPVKTRMLELCEALSGMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKRWREICPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVADEVKQERWERFMAHQQAISAARLQLKIGREIEVLIDEVDDQGAIGRSY ADAPEIDGNVYVDSANPLKPGDKVWVRVTDADEYDLWAEAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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