Pseudomonas oryzihabitans RIT370, UM91_RS00370 (relA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGGTCCTCGATCTCTTCTCCGGCCTAGGCAACTTCGCCTTGCCGCTGGCGCGGCAGGCCGCGGCCGTCACCGGGATCGAAGGGGTCGCGGCGATGACA TCCCGGGCAATACAAAATGCGCGTGACAACGGCATCGGCAACGCGCACTTTCTACAGGTGGACCTGTCGAACCCGCTACCCGCCGATCTGGGCAGCCATT CGCTGGCGCTGCTGGATCCGCCGCGCGACGGTGCGCTGGAAGTGGTTCGGCAACTCAGCGGCCTGGGTATCGGGCGACTGGTCTATGTCTCCTGCAATCC GGCCACCCTGGCGCGGGACGCGGGAGAGCTGGTCCGACAGGGCTATCGCATGACAAGAGCGGGCATTCTCGACATGTTCCCGCAGACCGCCCATGTGGAA GCCATGGTGTTGTTCGAAGCGGGCGGGATGCCCGGGTAACGACGGCTCGCCAACCGATGCGAGCCAATCCGGCGAAGGCACCGCCGTGAGGAAGGGGTAG
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| DNA Sequence for Gene |
>UM91_RS00370
|relA
ATGGTACAGGTCAGAGCGCATCAGCCAGTCAACGTCGATGGCAGCATCAACCTTCACGCCTGGCTGGATCACATCCAGAGCGTGGATCCGAATCTCGATC GCGAGACCTTGCTGGATGCCTGCGGCTTCGCCCGCACGGCGGAGGAGAATTCCGGCCAGGTCGAGCACACCTGGGCGGAGGGCACCTCCAGTTTCCATAC CGGGCTGGAGATGGCCGAGATCCTGGCCGATCTCAAGCTGGATCAGGACAGCCTGATCGCGGCCATCGTCTACCGGGCGGTGCGCGAGGGCAAGGCGACC CTGGAGTCGGCCGCGGAGCATTTCGGGCCGGTGGTGGCCAAGCTGATCGAAGGCGTGCTGCGCATGGCGGCGATCAGCGAGAGTCTCAATCCGCGCAAGT CCATGGTGCTGGGCAGCCAGACCCAGGTCGACAACCTGCGGCGCATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCCCTGATCAAGCTGGCCGAGCG CACCTGCGCCATCCGTGCGGTCAAGAACGCCACCGAAGAACGCCGCAACCGAGTGGCTCGCGAGGTAGCCGACATCTATGCACCCCTGGCCCACCGCCTG GGCATCGGTCATATCAAGTGGGAGCTGGAGGACCTGTCCTTCCGTTACCTGGAGCCCCAGCAGTACAAGCAGATCGCGACCCTGCTGCACGAGCGGCGGC TGGATCGCGAGCAGTACATCGCCGATGTCATGCAGCAGCTGCGTGACGAACTCACCGCCACCGGTATCAAGTCCGACATCAGTGGCCGGGCCAAGCACAT CTATTCCATCTGGCGGAAGATGCAGCGCAAGGGCCTGGAATTCAGCCAGATCTACGACGTGCGCGCGGTGCGGGTGCTGGTACCCGAGGTGCGTGACTGC TACACCGCGCTGGGTATCGTGCATACCCTGTGGCGGCACATTCCCCGCGAGTTCGACGACTATATCGCCAACCCGAAGGAGAACGGCTACCGTTCCCTGC ACACTGCGGTGATCGGTCCGGAGGGCAAGGTGCTGGAGGTGCAGATCCGTACCCACGCCATGCACGAAGAGGCCGAACTGGGGGTCTGCGCCCACTGGCG CTACAAGGGCACCGATGTCAAGTCGGCCTCCAACCACTACGAAGAGAAGATCTCCTGGTTGCGCCAGGTGCTGGAATGGCACGAAGAGCTGGGCGACATC GGCGGCCTGGCCGACCAGTTGCGCGTCGACATCGAGCCGGACCGGGTCTATGTCTTCACCCCCGACGGCCACGCCATCGACCTGCCCAAGGGCGCGACGC CGCTGGACTTCGCCTACCGGGTGCACACCGAGATCGGCCACAACTGCCGTGGCGCCAAGATCAACGGCCGCATCGTGCCGCTGAACTACCAGCTGCAGAC CGGCGAGCAGGTGGAGATCATCACCGGCAAGCAGGGCTCGCCCAGCCGCGACTGGCTCAACCCCAACCTCGGCTACGTCAACACCTCGCGGGCCCGGGCC AAGATCGTCCACTGGTTCAAGTTCCAGGCGCGTGACCAGAACGTTGCCGCCGGCAAGGCCATGGTCGAGCGCGAGTTGTCGCGCCTGGCGCTGCCGCCGG TGGACTTCAATACGCTGGCCGAGAAGGTCAACTACAAGGGTGCCGAGGACATGCTGGCGGCCCTGGGCGCCGGTGACCTGCGCCTGGCCCATGTGATGCA CGCCGCCCAGCAGCTGGTGGAGCCGGACAAGGGCGTCGATACCCTCGATCTCCTGCCGCGCAAGCCGACCAACAAGCCGGGCAAGCGCGGCGATGTGCAG ATCCAGGGCGTGGGCAACCTGCTCACCCAGATCGCCGGTTGCTGCCAGCCGGTGCCGGGCGATGCCATCGTCGGCTACATCACCCTGGGGCGCGGCGTGA CCATCCACCGGCAGGACTGCGCCAACGCCCTGCAGCTGGCCAGTCGCGAGCCGGAGCGGACCATTCAGGTGAGCTGGGGCCCGGTGCCGGTGCAGACCTA TCCGGTCGATATCGTCATCAAGGCCTTCGACCGCTCCGGTCTGTTGCGCGATGTCTCGCAGATCCTGCTCAACGAGCGGATCAATGTGCTGGCGGTGAAC ACCCGCTCCAATCGCGAGGAAAACACCGCCAACATGCTGCTGACCATCGAGATCCCCGGCCTGGACGCCCTCGGTCGTCTGCTCGGGCGAATCTCCCAGC TGCCCAACATCATCGAAGCCCGGCGCAATCGCGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGTGACGATGCCCCGACGAGGCGCCTCCTGGCGCCTCGTTCTTTTTCCAGTGACAGGATTCACCCAATGTACAAGCTCGACGACCTGCTGCACCTCA TGGCCCGGTTGCGCGATCCCCAACACGGCTGCCCCTGGGACCTGCGCCAGGACTACGCCAGCATCGTGCCCCACACCCTGGAAGAGGCCTACGAGGTCGC CGACACCATCGCCCGGCGGGATTTTCCGCAGCTGCGCGACGAGCTGGGCGATCTGCTGTTTCAGGTCGTCTACTACAGCCAGCTGGGGCGCGAGGATGGC CATTTCGACTTTGCCCAGGTGGTCGATGGCATCACCCGCAAGCTGGTGCGGCGCCATCCCCATGTCTTTCCCGATGGCGACCTGCATGGCCCGCTGGACC TGCCGCGGCTGGACGAGGCGACCATCAAGCGCCGCTGGGAAGAGATCAAGGCCGAGGAGCGGGCGGAAAAGGCCGCGGCGCCCGAGCAGCTGTCGCTGCT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRAHQPVNVDGSINLHAWLDHIQSVDPNLDRETLLDACGFARTAEENSGQVEHTWAEGTSSFHTGLEMAEILADLKLDQDSLIAAIVYRAVREGKAT LESAAEHFGPVVAKLIEGVLRMAAISESLNPRKSMVLGSQTQVDNLRRMLVAMVDDVRVALIKLAERTCAIRAVKNATEERRNRVAREVADIYAPLAHRL GIGHIKWELEDLSFRYLEPQQYKQIATLLHERRLDREQYIADVMQQLRDELTATGIKSDISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLVPEVRDC YTALGIVHTLWRHIPREFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAHWRYKGTDVKSASNHYEEKISWLRQVLEWHEELGDI GGLADQLRVDIEPDRVYVFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYQLQTGEQVEIITGKQGSPSRDWLNPNLGYVNTSRARA KIVHWFKFQARDQNVAAGKAMVERELSRLALPPVDFNTLAEKVNYKGAEDMLAALGAGDLRLAHVMHAAQQLVEPDKGVDTLDLLPRKPTNKPGKRGDVQ IQGVGNLLTQIAGCCQPVPGDAIVGYITLGRGVTIHRQDCANALQLASREPERTIQVSWGPVPVQTYPVDIVIKAFDRSGLLRDVSQILLNERINVLAVN TRSNREENTANMLLTIEIPGLDALGRLLGRISQLPNIIEARRNRAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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