Pseudomonas moraviensis R28-S, PMO01_26965
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCGCCGAGCATTTTTCCCTGCGCCTGGAAGCGATGCCGGAAGACAACAGCGGCCTGAATCTGCGCGAACGCCTGGAGCAGGTCGAGCGCACTTTGCT GCTCGATTGCCTGCGCAAGAACGACGGCAACCAGACCCTCGCGGCCCGCGAACTGGGCCTGCCACGGCGCACGCTGCTGTACCGCCTCGGGCGCCTGAAT ATCAATTTGGGTGACTTTGATGGTTGAGCTACAGCACTTCTTCGAACCCAACACATACCCTGTGGCGAGGGGATTTATCCCCGTTCGGCTGCGCAGCAGT CGCAGTCCGGTACATACGGTTTCACTGAGAAATCGCGCTGGCAGGTTATGGGGGCACTGCGCGCCCCAACGGGGGCAAGTCCCCTGGCCACGGGAGGTCG CCGTACCTCCAGGCTATGGCGCAAGGCCCCGATCTAGAGGCTTTGAGCCCACCTCAAGAGCTTATTTCAGCGCCGCCCGCAAGGGTCGGCGCTTTGTGCT
|
|
| DNA Sequence for Gene |
>PMO01_26965
TTGTCTACACCTGGAGACCCTCTGATGTCTGTTCGTCACTGGCACGCTGTCCTGCTGACCCTCGTCGTTCTATGCGGCCTTGGCGGCTGTAGCGGCAATT ACAAATTCAACGACAACGACTATCGCCCGTTGGGTGATCCGCAAGCGGTCAATCGCGGCAAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGCAAGGAGCATCAAACATGGAATTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCCACCGAGCTGTGCCAGCGGACCTTCAAGCAGGCCGGCG GCGTGATCGGGCGCGGCGAGGACTGCGACTGGATCATCCCTGACCGCAAGCGGCACCTGTCCAATCACCACGCGATTGTCAGCTACCGCGAGGGCTCGTT CTTCCTTACCGACACCAGCAGCAACGGTGTCCAGGACGGCAGCAGCGGCGCGCGCCTGCACAAGGGCGAGCCGGTGCGTATTGAGCACGGCAGCACCTAC ATTCTCGGCGACTTCGAGATCCGTGCGCGGCTGGTTCGTGACCCGGCGACCTTCGACGGCGAAGTAGGCCGTCCGCGCGCCGCTGGCAGCATCATTCCGG ATGACGCGTTCCTCGACCTCGACCCGCTCAATGCGCTCGAACAGCAAGAGCGCGTCTACTCGGAAATCGACGAACTGCTGTCGCCCACCGCCAAGCCGGA
|
|
| Amino Acid Sequence |
>type VI secretion protein
MSTPGDPLMSVRHWHAVLLTLVVLCGLGGCSGNYKFNDNDYRPLGDPQAVNRGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|