Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTGATGGCAAACAGCAGCAAGGAACCGAGGCCCATGCCGAGCTTGCCGAGAAATGCCAGCGCGATGAACAGCACGCCGAGGATCAAGCCGCGAATGCCCA GATCGATGGCAAACGCCACCGCGCGCACCATCAACCCGGCGGGGCGCAACGGCAGGTCGATGCCTTCCGGCGTTTCGACCTGATGGCGCGTATCCAGCGG TGCTTTCCTTCGCGGTGCTGTGGGCTCGAGCATGGGCTACCTGATGTTCGCCTGTTCGGGGTGCAAGTGCGCCTGATGCTAGCAGCCTCTCGGGTGTGGG AGCGAGCCTGCTCGCGAATGTGGTGGGTCAGTCAGCCTGTGGGCAACTGACAGAACGCCTTCGCGGGCAGGCTTGCTCCCACAAGGGCAATCCATTCCAG TTGTAGGAATCTGGAGAAATTGCTGTTCTAGGGCGACCAGGCTGGCCGTGGCAGCCCTGAAACGCCTAGACTTCGCCGATCTTCTGTTCAGGATTCGCCC
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DNA Sequence for Gene |
>PMO01_21180
|sbcB
GTGACTTCAATCTTCTGGTACGACTACGAAACCACTGGCATCAATCCGCGCAACGACCGACCGCTGCAAGTGGCCGGGATTCGCACCGACCATGCGCTCA ACGAAATCGACGAGCCGGTCAATCTCTATTGCCAGCCCAGCGAAGACATCCTGCCGCACCCGGCGGCGTGCGCGATCACTGGCATCACCCCCGGTCAGCT CGCTGAAAAAGGCTTGAGCGAAGCCGATTTCATGACTCGCGTGCATGCGCAACTGGCCACACCGGGGACCTGTGGCGCCGGTTACAACACCTTGCGTTTC GACGATGAGATGACTCGCTACAGCCTGTATCGCAATTTCTTCGACCCCTACGCCCGTGAATGGCAGGGTGGCAACAGTCGCTGGGATCTGATTGATGTGG TGCGCGCCGCTTACGCATTGCGCCCGGACGGTCTGGTCTGGCCGACCGATGATGAAGGCCGCGTGACCCTCAAGCTTGAACGCCTCACGGCGGCCAACAA TATCGATCACGGGCACGCTCACGAAGCCCTGTCGGATGTGCGCGCCACCATTGCGTTGGCGCGGCTGATTCGCGAGAAACAACCCAAGCTCTACGAGTGG CTGTTCCAGTTGCGCAGCAAACAGAAGGTGATGGATCAGATCCGCCTGTTGCAGCCACTGGTGCATGTGTCCGGGCGTTTCTCGGCGGCGCGCAGTTATG TCGGCGTGGTGCTGCCGCTGGCCTGGCACCCGAAGAATCGCAACGCTCTGATCGTCTGTGATCTGCATCGTGATCCGCAGGGGTTGCTGGACCTCGATGC GCAAGCCCTGCGTCAGCGTCTTTATACCCGTCGCGATGAGTTGGCCGAAGGCGAACTGCCAGTGCCGCTCAAGCTGATTCATATCAATCGCTGCCCGGTT GTAGCGCCGCTGGCGGTATTGCGCGCGCAAGACCAGCAGCGCCTTGGGCTGGACATGGCGCTTTATCAGGAGCGGACAGTGCGACTAACTGACGCACAAC AAGTCTGGAAAGATAAAGTCGCGGCGATTTATGCCAGCGAAGATTTCACTCCCAGCGAAGATCCCGAGCAGCAGTTGTACGATGGATTTATCGGTGATCG TGATCGTCGTTTATGCGAACAAGTTCGAACGGCCGACCCTGCGCAATTGGCGCAAGAGCAGTGGCCTTTCGATGATGAACGTTTGCCTGAATTACTTTTT CGATATCGAGCACGCAACTTTCCGGACACCCTGGATGTGGCCGAACAAGAGCGCTGGAAATTATTTTGTCAGCAGCGCCTGACGCAACCCGAGGCAGGTG CGCCGAATACCGTGCAGTCATTTATCGAGGCCGCCGAGCAATGGTCGCTTAGTGCGTCACCGATGCAGCGAGAGGTGCTCAATGACTGGCAGAATTATGT CCAGGCATTACGCAAACGTTTGAATCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AATCGAACATGCCCGGACAATAAATTACGGGCATAAAAAAACGCCAGCGCTGGCTGGCGTTCTTTTGTTCGCGGATCGCTCTGCGAAGGCGTCGCGGCTT AGCCCAGCAGGGTAGCCCAGCCTTCAACCACGTCGCCGCCCCACTTGGCTTTCCACTCTTTCAGAGTTTTGTGGTTGCCACCTTTGGTTTCGATGACTTC ACCGTTGTGCGGGTTTTTGTATTGCTTAACTTTGCGTGCACGCTTGGTGCCGGTAGTTTTTACTGCGCCGCCACGTGGAGCCTTGGATTTGGCTTCTGGA TCCAGCAGCGCGATGATGTCACGCAGCGACTTGGAGTATTCACCCATCAGCGTGCGCAGTTTGCCTTCGAATTCCAGTTCGGCTTGCAGTTTGTCGTCTT CGGACAGGTTCTTCAGACGGGCTTGCAGCTCTTTGATGGCTTCTTCGGTGGCGCGATATTCGTTGATCAAGGACATGAGTACTACCTTTTGTAGAATGCT
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Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRNDRPLQVAGIRTDHALNEIDEPVNLYCQPSEDILPHPAACAITGITPGQLAEKGLSEADFMTRVHAQLATPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANNIDHGHAHEALSDVRATIALARLIREKQPKLYEW LFQLRSKQKVMDQIRLLQPLVHVSGRFSAARSYVGVVLPLAWHPKNRNALIVCDLHRDPQGLLDLDAQALRQRLYTRRDELAEGELPVPLKLIHINRCPV VAPLAVLRAQDQQRLGLDMALYQERTVRLTDAQQVWKDKVAAIYASEDFTPSEDPEQQLYDGFIGDRDRRLCEQVRTADPAQLAQEQWPFDDERLPELLF RYRARNFPDTLDVAEQERWKLFCQQRLTQPEAGAPNTVQSFIEAAEQWSLSASPMQREVLNDWQNYVQALRKRLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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