Pseudomonas moraviensis R28-S, PMO01_15640 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGTGGCGAGGAAGGCGGTGACCACGCCAGTCGCGGTAAAACCATGGGCGCCCCATGCTTTGAGCCTGGCGATGTGTACGGTGGATATCACGGGGGCGTT CTCCAGAAAGTGAAGCAAGCCGGGTATCGCCCATCGTCAGAAAGGGCGTCGGCAAACCGGGTCGGGTTGCAGCTATCGACCGGTTTGGCCGGGATAAGGT TCACCACCCATGAATCTTAGCTGGCTCGCGGAAAATTTCTCGGGTGCAATTTCATCGGTGACCCGGCGTCAGCCCAACGGTGCTGGCGCTATGGCTGCGT CGGTCTATCGTTGCCTGACGCAATCAGGCCGGAAAAGCCTTAGTGTCTGCACTCTAGTTTAGCCAGCCCCAGCCAATTACTGGATGTGTCGTTACAAGCC CCGGCCGCTCCATCCGTCCGGGGCTTTTTTCCTCGATTGAATTTTTCCGCCGCCGTGTCGCTCTTCTGCATAACAGAACCCGTCTGCCATCGGTGTGCTC
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| DNA Sequence for Gene |
>PMO01_15640
|ligD
ATGAACAGGAACCTCGACGATTACAACCGCATGCGTGATTTTTCCGCGACGTCGGAACCGGCCGCAGTCAAGCGCTCGGGCCGTAAGTCGGCCAAGGATC ATGCGTTGCAGTTCTGCATCCAGAAGCACGACGCTTCGCACCTGCATTACGACTTTCGCCTGGAACTCGACGGCGCGCTGAAAAGCTGGGCGGTGCCGAA GGGGCCGTCGCTGGACCCGTCGGTCAAGCGTCTGGCGATTCATGTCGAGGATCATCCGCTCGATTATGCGACGTTCGAAGGCAGCATTCCCGAGGGGCAT TACGGCGCCGGTGATGTGATCGTCTGGGATCGCGGCGTGTGGATTCCGCTGGACGATCCGCACAAGGCCTATGCCAAGGGCCGACTGAAGTTCGAGCTTC AGGGCGAGAAGCTCGGCGGCGTTTGGAATCTGGTGCGTACGCACATGCCGGGCAAGAAAGAACAATGGTTCCTGATCAAGCATCAGGACAACGCCGCGCG ACCGCAGGATGATTTCGACGTGCTGGTCGCCGAGCCCGACAGCGTGCTCAGCGAGCGCACGATTGTCGGCAAATCGGCGACTGCTGCCGATAAAGCCAAA CCGGTAAAAAAGGCCCCGGCCAAGCCGCGCAAGCAGGCGTCCGGGCAGCTTACCGGCGCGCGCAAGGCCAAGTTGCCGGCACTGATCAAGCCGGAACTGG CGACGCTGGTCGACAGCGCACCCGAAGGGCAGTGGAGCTACGAGATCAAGTTCGACGGCTACCGGATCATGGCGCGGATCGATCACGATGAGGTGCAGCT GTTCACCCGCAATGGTCACGACTGGACGCACAAGCTGCCGCAGCAGGCCAAGGCGCTGGCGGCATTGGGTCTGGAATCGGCGTGGCTGGACGGTGAAATG GTTGTGGCCAATGAGCAAGGCGTGCCGGACTTTCAGGCGTTGCAGAATGCCTTCGATGCCGGGCGCAGCGGCGACATTGTTTATTACCTGTTCGACGTGC CGTATCTGAATGGCGTCGACCTGCGCGATGTGCCGGTGGAAGAACGCCGCGCTGCGCTGAGCACCATCCTCGGTGCGCAGAAAGAATCCTCAACGCTGCG CTTCTCCGAAGCCTTCGAAGAAACCCCGGACGCGCTGCTCAACAGCGCTTGCCAGATGCAGATGGAAGGCCTGATCGGCAAACGCCTCGGCTCGCCTTAC GTGTCTCGGCGCAGCGGCGACTGGATCAAGCTCAAATGCAAGCATCGCCAGGAATTCGTCATCGTCGGCTACACCGATCCGAAAGGTGCGCGCAGTGCTT TCGGTGCCTTGCTGCTCGGCCTGCACGACCGTGACAGCGGCGAGTTGCGCTATGCCGGCAAGGTCGGCACCGGGTTCAACGAAACCACATTGAAAAGCAT CCTCGCCCAACTCAAGCCGTTGCAGACCAAAAGCGCCGCAGTGGTCAATCCGCCCAGCGGTTTCGAGGCCAAAGGCGTGCACTGGCTCAAACCCAAACTG CTGGCCGAAGTGGCATTCGCCGAGATGACCAAGGACGGCTCGGTGCGCCACGCCGTCTTCCATGGTTTGCGCGATGACAAACCGGCCAAGGACATTACCG AGGAGCGAGCGAAGCCTGTGAAAGCTGCCAAGTCCGAAAAGAACGAAAAAACCGAAAAGACCAAAACCGCCGACAAGCAGCCGGCAAAGAAAACCGCCGC CAGCAAAAAAGCCGAGACCGCACCGTCGCAATCAGGACTGGCCGGCGGCAAGGTACGCATCACCCATCCGGATCGGGTGATTGACGCCGTCAGTGGCACG ACCAAAATGCAACTGGCGCAGTACTACGCCAGTGTCGCCGTATACATCCTGCCGCAACTCAAGGATCGCCCCGTGGCACTGGTGCGTGCGCCGGACGGCA TCGCTGGCGAATTGTTCTTTCAGAAGAACGCCGACCGCTTGGCCATTCCCGGCATCACCGCACTGGACAAGGACGTTACCGGCCAGCCGGTAATGATGAT CAACAATCCCGAAGCGCTGGTGGGTGCGGTGCAGATGAGCACGGTGGAGCTGCACACCTGGAATGCCACGAAAGTGGATCTGGACAAGCCTGATCGCTTC GTCCTCGACCTCGACCCGGATCCGGCGCTGCCATGGAAGAGCATGGTTGAAGCCACCGCGCTGACCCTCACTGTGCTAGATGAGCTGGGCCTTAAAGCCT TCCTGAAAACCAGCGGCGGCAAAGGCATTCACCTGGTGGTGCCATTGACCCGCAAGCATGGCTGGGACGAAGTGAAGGACTTCAGCCACGCCATCGTCAG CCACATGGCCAAGTTGCTGCCGGATCGTATTTCAGCGGTGTCCGGGCCGAAAAACCGCGTCGGGCGGATCTTCATCGATTACCTGCGCAACGGCCTCGGC GCCACCACCATTTGCGCTTACGCCGCACGCGCGCGGGAAGGCATGCCGGTGTCGGTGCCGCTGTACCGAGAGGAAGTCGCTGAAATCAAGGGCGGTAATC ACTGGAACATCTACAACGTTCACGAGCGTCTGACCGAAGTCGGTGATGAGCCTTGGGCGGACATGAAGAAAACCCGTCAGACCATCACCGCCGAGATGCG CAAACGCGTCGGCATGAAAAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTCGCGCAGCAAGTCGTGGGCGTTGAGCAGTTCGAAGGCGATTTGCGGGTGGTTTTCCAAGCCCTTGCGAATCGCCGCCGGAATTGCCGCGCGA GTCTTGCGACACAGGCCTGGCAGCTCGTCGATCTGAATGGCGATACCGCGCATGGTGCGCACTTCGTTGAAACCGGGGGCGACGTCGACACGGATGCCGA GTTGCTCGTACATACGCTGTTGCAGGCGTTTGAGGTCGGCGAGGTCTTTGAGTTGTTCCAGGCGCGCCAGAAGAATTTTTTCTTCAGCACGAGTCAAGCG CAGGATGCGCAGATCGGCGCCGGGGGTTTCCAGCAACGGATCGCGCCCGCAGATGCAGGCGCCGGGAGGGCAGGGTGAGCGCAAGGGCACGGTGGTCGTC ATGGCCTCCATCATAGAGGCCGTCGGACATGTTTGCCTATGCGCACTCAGCGGCCGTCCATCGGCCGCTGCGTCCCTCGTGACTACTGCTGCACGCCTTC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MNRNLDDYNRMRDFSATSEPAAVKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGALKSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGH YGAGDVIVWDRGVWIPLDDPHKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPDSVLSERTIVGKSATAADKAK PVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSAPEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM VVANEQGVPDFQALQNAFDAGRSGDIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQKESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPY VSRRSGDWIKLKCKHRQEFVIVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAAVVNPPSGFEAKGVHWLKPKL LAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPVKAAKSEKNEKTEKTKTADKQPAKKTAASKKAETAPSQSGLAGGKVRITHPDRVIDAVSGT TKMQLAQYYASVAVYILPQLKDRPVALVRAPDGIAGELFFQKNADRLAIPGITALDKDVTGQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRF VLDLDPDPALPWKSMVEATALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRISAVSGPKNRVGRIFIDYLRNGLG ATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNIYNVHERLTEVGDEPWADMKKTRQTITAEMRKRVGMKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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