Pseudomonas moraviensis R28-S, PMO01_13320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCGTCAATCACAGCGACATCTCGGTGCGCCTCAATGCACGCGATTGCCAGGTCTGCGTGCTGCGCGGTTCGGTGCAATTGCAGCCGCTGCACGGCCCG GCGCTGGTATTGCAGCAGGGCCAGCAAGTCAGCCTGCAAGCTTCGGGCGCGGGGGCAGTGACGGCATTCGATGCGTTGATGCCCGGTTGGCGCGACGGTG TGCTGATGGCGCAAAACCAGCCGCTAGGTGATTTCCTTCGCGAGCTGAGTCGCTACCGCTCGGGCGTGCTGCGCTGGGATCCGGCGCTGGAATCGCTGCG CATCACCGGCAGTTTCCGCCTCGACGATACCGATCAAGTGCTGGCACTGCTGGCAGCCAGTTTGCCCGTCGATGTGCACACGCGAACGCGATTTTGGGTG TCACTGGTGCCGCGCGCAGAAAAAACTGGCTGAAGCCTGTCCCTTTTTTTCGCCTCGCTGGTCATTCCAGGCAAGTGAACAAAATCGAGAGCTTCTTCCA
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| DNA Sequence for Gene |
>PMO01_13320
ATGCCCGCAGTATTTCCAGGTCGTTTGCGTCCGTTGTTGCAGTTGAGCCTTTTGCTGAGCCTGAGTGCCAGCCCCTTATTGATGCAATCGAGCTGGGCCG ACGATGGCAGCCGCCGCAGTTATCAGGTGCCGGCCGGTAGTCTGAGTACAGCGCTGACGCGCTTCGCCGGTCTCGCTGGAGTCAATCTTTCGGTGGATCC GGCGCTGGTCAGCGGCCGCAACAGCAATGGTTTGTCCGGCGAGTTCGGTGTAGAGGAGGGGTTCAGCCGGTTGTTGCTGGGTTCCGGTTTGCAGCTGCAA CCGGTCGGTGATCAGGCTTATACGCTGGTGCCCGCAGCGCAAGACAGCACCTTGCAACTGGCACCGACATCGATTCTCGGCGCGAGCGGTTCAGCGGATG CCGACGTGTTTGCTGGCGGTCAGGTTGCACGGCGCGGCTCGCAAGGGCTGTTGGGCTCCAGGGATTTCATGGAAACCCCGTTCAGCATGACCACCTACAC CAGCGAAACGGTGAAAAACCAACAGGCGCGCACCCTCGGCGACTTGATCGGCAGCGACCCTTCGGTACGCGCCACCAACCCGGCCGGTGGCCGCTATGAA CAATTCACCATCCGTGGTTTCAGCCTGTTCAACAGTGATGTTGCCTACAACGGCCTCTACGGAATCTTGCCGACGTACACCATTGATATGGAAATGGCTG ATCGCGTCGACATCCTCAAAGGCCCGAGCCAATTGATCAACGGGATTTCGCCTCGGGGCAGCGTAGGAGGGGGGATCAACGTCGTGCCGAAGCGCGCGAC CGACAAGCCGATCACCTCGCTGACGGCCAACTACGCCTCGAACAATCAAGTCGGCGGCGCGGTGGATGTCGGAAGGCGTTTTGGTGACGAAAACCAATTC GGTCTGCGCTTCAACGGGGTCAAGCAGTCCGGAGATACGGAATGGGATCACCAGAGCGTCGATCGCGACATGGCGGTGCTCGGTCTGGACTTTCGTGGTG AACGCTTGCGACTTTCCACCGATATCGGCCACACCGAACGCGACACCGACGCACCGCAGGAACGCGTGCAAGTCGCCGCCAATGCCAAAGTGCCGAACGC CAATGATGTGCGCGACAACTATGCGCAACCCTGGAGCCGGGCGCGCACTAAAGACACTTTCGGCACGGTGAACGGCGAGTTCGATGTCAGCGATTCGGTC ATGCTGTATGGCGGCGTCGGCGCACGCAAAAGCAATCATGACTTCTTGCGCCATGCAGTTTCGGTGACCAACGATGCCGGTGATTTCAGCGTTCAGCCGC GCGACTTCACTCGCGACGAGAACGTCCGCACGGCTACCGCTGGCGTTCGTAACTGGTTCCAGACCGGGCCGGTCAGCCATGAAGTGAACCTGGCGGCCAA CTACTTTTATATGGACTTCGAAAACGGCGGCGCCCGTTACGCGGCCGGGCGCAGCAATCTCTACGACCCGGTGGAAATCGCCAGACCCGGCACGCCGACC CGCAATGACGCAAAGGTCTACACAGAGAACCGCTTCAGCGGCGTGGCGCTGTCGGACACACTCGGCTTCTTCGACGATCGTCTGTTGCTGACTTTAGGGG CGCGCTGGCAGCGAGTCAAAGTCGATGACTGGAGCGACGGCATCAAGGGCGACACGGCTTACGATGAGGAAAAAGTCTCGCCATCGGGCGGGATTCTGTT CAAGGCGACGGACAAACTTTCGCTGTACGCCAACTACATGGAAGGTCTGAGCCAAGGCAAGATCGCGCCATCGACATCTATCAACGAAGACGAAATCTTC CCGCCATTCATCAGCCGCCAGGTCGAAGTCGGCGCCAAGTACGACGCGGGCTCATACGCGCTGACGGCAGCGGTGTTCCGCATCAAACAGCCTGCGTACG AAACCAACGCCACCACGCGAGTCTTCGGCCCAAACGGAAAGCGCGAGAACAATGGCGTAGAACTGAGCGTGTTCGGCGAACCGCTCAAAGGCTTCAGATT GCTCGGCGGTGTGATGTACATCGACAGCGAACTGACCCACACCACCAACGGCACATTCGACGGCAACCGCGCACCGGCGACACCGAAATACAACGTCAAC CTTGGTGCGGAGTGGGACGTGCCGAGCGTGCCGGGGCTGACTTTGACCAGCCGTGGTATTTACTCGAGTTCGCAGTATCTGGACCAGTCGAACGACAAGG AAATCGACTCATGGGAACGGTTCGACGTCGGCACACGCTATGCTTTCAAGCTGGACGAGAAGACGATCACCTTGCGCGCCAATGTCGAAAACGTGCTGGA TAAACGCTACTGGAGCTCGGCGGGTGCTTCGGATGACAGCGAACCGGGATTGACGCTTTCGACGCCGCGAACGTATCTGCTGTCGGCGACGGTAGACTTC TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAGTAGGGTAAATGCGTCGATTATCTTCGAAAATACGTTAACTACACTAAATGACCGTTTAGTTGAGCTAACAAAAAATAGTACCTGTTATGGAGAAG GTCATGATTCAGCGCAAGCCGAACGCAACTGATGTGATTACTGCGCTGAATCTACAGCCTCATGTCGAGGGCGGGTATTACCGCAGAACCTATCAAGCCG ATCACCGTGACTGCCTCGAAACGCAGCAAGGCCCGCCATATCTGCTGACCTCGATCTACTATCTGCTCACTGAGCAATCGCCGGCGGGCCAGTTTCATTT CAACCAGTCCGACATCCTGCATTATTTTCAGTTGGGCGACGTCATCGAATACAACCTGATTCACGCCGACCCCCTGGTGATGGGCAGCGATGTTTTGGCT GGTCAGCAACTGCAGTTGCACGTTCCGGGTGGAATATGGAAAGCCTCTCGATTACTGGAAGGCTCAAATGGCTTTGGCTTGATCAGCGAAGCGGTTTCGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MPAVFPGRLRPLLQLSLLLSLSASPLLMQSSWADDGSRRSYQVPAGSLSTALTRFAGLAGVNLSVDPALVSGRNSNGLSGEFGVEEGFSRLLLGSGLQLQ PVGDQAYTLVPAAQDSTLQLAPTSILGASGSADADVFAGGQVARRGSQGLLGSRDFMETPFSMTTYTSETVKNQQARTLGDLIGSDPSVRATNPAGGRYE QFTIRGFSLFNSDVAYNGLYGILPTYTIDMEMADRVDILKGPSQLINGISPRGSVGGGINVVPKRATDKPITSLTANYASNNQVGGAVDVGRRFGDENQF GLRFNGVKQSGDTEWDHQSVDRDMAVLGLDFRGERLRLSTDIGHTERDTDAPQERVQVAANAKVPNANDVRDNYAQPWSRARTKDTFGTVNGEFDVSDSV MLYGGVGARKSNHDFLRHAVSVTNDAGDFSVQPRDFTRDENVRTATAGVRNWFQTGPVSHEVNLAANYFYMDFENGGARYAAGRSNLYDPVEIARPGTPT RNDAKVYTENRFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDGIKGDTAYDEEKVSPSGGILFKATDKLSLYANYMEGLSQGKIAPSTSINEDEIF PPFISRQVEVGAKYDAGSYALTAAVFRIKQPAYETNATTRVFGPNGKRENNGVELSVFGEPLKGFRLLGGVMYIDSELTHTTNGTFDGNRAPATPKYNVN LGAEWDVPSVPGLTLTSRGIYSSSQYLDQSNDKEIDSWERFDVGTRYAFKLDEKTITLRANVENVLDKRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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