Pseudomonas moraviensis R28-S, PMO01_12700
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTCGGCGTGCTGTATGAAAGCTACATCCACCCGCTGACCATTCTTTCGACATTGCCCTCGGCCGGGGTTGGCGCGTTGCTGTCGATCTATGCAT TGGGGGGCGAGTTCAGCCTGATTTCCCTGCTGGGGATATTCCTGCTGATCGGCGTGGTGAAAAAGAACGCCATCCTGATGATCGATCTGGCGCTGCAATT GGAGCGTCATCAGGGCCTGTCGCCGCTGGAGTCGATCCGCAGCGCCTGCCTGCAACGCCTGCGACCGATTCTGATGACCACGCTGGCGGCAATCCTCGGC GCCTTGCCGTTGCTGCTCGGCCGTGCCGAGGGTGCGGAAATGCGCCAGCCGCTGGGCCTGACCATCATTGGCGGCCTGGTGTTCAGCCAGGTCCTGACCC TTTACACCACCCCGGTGGTTTACCTCTATCTCGACAAGCTGCGCCATCGCTTCAACAAATGGCGTGGCGTGCGCACTGATGCCGCTCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>PMO01_12700
ATGACTGACCGTTCGCTTCTCCAATTGGCCACCGTCCGCGGCTCGCGCCTGTTGAGCCTGTCACTGTGCGTGGCGCTGCTCAGCGCTTGCGCAGTCGGCC CGGACTACCAGCGGCCGCAAACTGCCGAAATCGCACAGTTCAAGGAGGCCGAAGGCTGGCGTCAGGCCAATCCCAGCGACTCGCTGGCCCGTGGCGCCTG GTGGGAGTTGTACGGCGACCAACAGCTCAACGCCTTGATCGAAAAACTCAACAGCTCCAACCAGACCGTTGCCCAGTCCGAAGCGCAGTTTCGTCAGGCG CAGGCTTTGGTGCGCAGCGCGCGTGGGGCGTTTTACCCCAGCGTCGACCTGAGTCTGGGCAAGACCCGTTCGAGTCAGGGCACCGGTAGCAGCAGTTCGA GCCTGAGCAGTTCCTCAAGCGGCATCCGCGACACTTATAACGCGCAGTTGGGCGTCAGTTGGGAAGCCGACGTCTGGGGCAAGCTGCGCCGTGGCCTGGA GGCCGACGAGGCCAACGCCCAGGCGAGCTTTGCCGATCTGGCAGCGATGCGTCTGAGTCAGCAATCGGAACTGGTGCAGAACTACCTGCAACTGCGCGTC ATCGATCAGCAGAAGCGTCTGCTCGAGGCCACCGTTGCCGCTTATGAACGCTCGCTGAAAATGACCCAGAACCAGTACCGCGCCGGGGTTTCCGGGCGCG ATGCGGTGGCGCAGGCGCAAACCCAGTTGAAAAGCACCCAGGCCGATCTGGTCGACCTGATCTGGCAGCGTGCACAGTTTGAAAACGCCATCGCCGTACT GACCGGCGAAGCACCGGCCAACTTCAGCATTGCCGAAAGCCAGAGCATCCCGAATCTGCCGCAGGTACCGCTGAGCTTGCCTTCACAACTGCTGGAACGC CGTCCTGACATCGCTTCGGCCGAACGCTCGGTGATTGCCGCCAATGCCAACATCGGCGTGGCGAAAGCCGCGTATTACCCGGACCTGACCCTGAGCCTGA GCGGCGGCTACAGCAGCAGTACCTCGAAAAACCTGATTAGCCTGCCGAACCGTTTCTGGTCGGTCGGCCCGCAGCTTTCTTTGCCGCTGTTCGACGGTGG CATTCGTTCGGCCGAGGTCGACCGCAGCGAGGCGGCCTATGACGAAACCGTCGCCCGCTACCGCCAGACCGTGCTCGACGGCTTCCGCGAAGTGGAAAAC TACCTGGTCCAGCTCAAGGTGTATGAAGACGAAGCAGCAGTGCGCCAGGAAGCGCTGGATGCTGCCCGCGATTCCCTGCGCCTGACGGAAAACCAGTACA AGGCCGGGCTGATTGCTTATATCGACGTGGTAGTGGTGCAGGCCACGGCGCTGAGTAACGAACGAAGTGTGCTGAATATTCTGCAGAGCCGACTGATCGC CAGCGTACAACTGATCGCCGCACTGGGCGGCGGCTGGGACGGCCAACTGGACGTCGGCGACAACACCCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGTTCCCACGCTCTGCGTGGGAATGCCTCACCGGACGCTCCGCGTTCAGCTTTGAAAGGGACGCGGAGCGTCCCCGGCTGCATTCCCACGCAGAGCGTG GGAACGATCGTCATCAACCAGTTCAGCTTAGGTTAAAGCCCACCGCAGAGCCTTGTAGGACGATCGAACAAGCGTTTCATCGGCTTGATGGCAATTTGGT TACTTTGTCAGTGCGTTCTTCCGCGCAATCAGTACAATCGCCGCATTTGCCCGACCGAGAATGGAAGCAGTACGGTTTCGGCTTGTCACGAGAACGTCCA TGCTCATCGGCAGCTATTCCTTCACTTTGGTTTTCATCTCGTTGTGCGTGGCCATTCTGGCTTCCTACACGGCGCTCGACCTGACTGGGCGCATCGCCAC GGCGAAAGGCCGGGCCGTGCATTTCTGGACGGCGGGCGGGGCGTTGGCGATGGGCGTTGGCGTCTGGTCGATGCATTTCATCGGCATGCTCGCCTTCAAA
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| Amino Acid Sequence |
>RND transporter
MTDRSLLQLATVRGSRLLSLSLCVALLSACAVGPDYQRPQTAEIAQFKEAEGWRQANPSDSLARGAWWELYGDQQLNALIEKLNSSNQTVAQSEAQFRQA QALVRSARGAFYPSVDLSLGKTRSSQGTGSSSSSLSSSSSGIRDTYNAQLGVSWEADVWGKLRRGLEADEANAQASFADLAAMRLSQQSELVQNYLQLRV IDQQKRLLEATVAAYERSLKMTQNQYRAGVSGRDAVAQAQTQLKSTQADLVDLIWQRAQFENAIAVLTGEAPANFSIAESQSIPNLPQVPLSLPSQLLER RPDIASAERSVIAANANIGVAKAAYYPDLTLSLSGGYSSSTSKNLISLPNRFWSVGPQLSLPLFDGGIRSAEVDRSEAAYDETVARYRQTVLDGFREVEN YLVQLKVYEDEAAVRQEALDAARDSLRLTENQYKAGLIAYIDVVVVQATALSNERSVLNILQSRLIASVQLIAALGGGWDGQLDVGDNTR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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