Pseudomonas moraviensis R28-S, PMO01_11540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTACACCATCGCCGACATCGCCGTGTGGCCCTGGTACGGGCAACTGGTGCGCAACAACGTTTACTCGGCGGCGGAATTTCTCGCGGCGCATGAATACAC CCATGTGCAGCGCTGGGCCGAAGCAATCGCCAAGCGGCCAGCGGTCATGCGTGGGCAGCGAGTGAATCGCACCTGGGGTGATGAAGACAGTCAGGTGCCG GAGCGGCATGAGGCGAAGGATCTGGACTGATTTCAAAAAAACCGCATAACCCTGTGGGAGCGAGCCTGCTCGCGAAAGCGGAGTATCAGACAACGCATCT GTTGAATGACACACCGCCTTCGCGAGCAGGCTCGCTCCCACATTTGCGTCCGAAGGCCATCGAATCCAATTGTGAAAAAATCATTAACTAACTGACTCGT ACGGGTTTATTCCCCCGGAAACTTCCGACATACTAATGCGAATAATTCTTACATGCACTCGCATTAGTTTCGTTTGGGTAAATCTTGGGGAAGCAGATAG
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| DNA Sequence for Gene |
>PMO01_11540
ATGTCGTTTCACACCATTCACCGCCGCTCGAACCTTTCACCTAACCTCCTCGCAATCGCCATCGGCATGGCCAGCATCGCTCCTGCGTTGGCTGAAGAAA CCGCAGCCACTGCGCCCACCAATGGCCCGCTGGAACTGCAAGCGACCGAAATCGGCGCTACGCAGATGAGCAGCACCACCGAAGACACGCAGTCCTACAC CACCGGCCCGATGCAGACCGCGACCAAGCTGTCGCTGACCATGCGCGAAACGCCGCAGGCGGTGACGGTGATCACTCGCCAGCGCATGGACGACCAGAAC ATGACCAGCGTCAACGACGTGGTGCGTGGCACGCCGGGGCTGTTTCTCAGCGAGGCCAGCGGCCCGGGGCGGCAGACTTACAAGGCGCGTGGTTTCGACA TCGACAACATCATGTACGACGGCCTGCCCAGCTCGTATTCGCCGTTCACTTTGGCAGTGCAACCGAACCTGGCGATGTTCGACCGAGTGGAAATCGTCCG TGGTGCGACCGGCCTGGTCACCGGTGCCGGCAACCCGTCGGCGGCGATCAACATGGTGCGCAAGCGTCCGACCGCTGACCAGCGCGTGACCCTCACCGGC GCCGCCGGCAGCTGGGATGACTACCGTGGCGAAGTCGACGCCTCCAGCCCGCTGAACGACAGCGGCACCCTGCGTGGCCGGGTGGTGACGTCGTATCAGG GTGCCGACAGTTTTCGCGACAAGGAAGAAAACGATCACGGCCTGTTCTACGCCATCGGTGAAGCCGACCTGAGCGACAGCACCACGGCGACCCTCGGTTT CTCCCGGCAGAACGATCAGACCAACTATTTCTGGGGCGGCCTGCCGATTGGCGAAGACGGCCACCACCTCGACCTGCCCCGCTCCACCTATCCCGGTACC GATTGGGAGAACCGCAAGCTGCAAGTCGACACCGTATTCGGTGAAGTCGAACACCGTTTCGACAACGACTGGAAACTGCACCTCGGCGGTTCGACCTCAA CCCTCGAGGGCGAATTCTCCGGCACGTACCTGTCGCGCTACGACGGCCCGCTGGAAACCACCGCCTACCAATCGCACCACACCGACAAGCAACTCGCCTT CGACGGTTTCGCCAGCGGCCCGTTCGAAGCCTTCGGCCGTACCCACGAATTGGTAGTCGGCGCCAGCAACCGCGTGTACGACGCCACCACCAAGGAATAC GCGCCCTACGACACCGGCCTGCCGATCGCCGCGCCCAAGCCTGACTTCGTGCGCAGTGGCAAGTCGCGCAACGTCACCACCCAGGACGCGGTTTACCTGA CCACGCGCTTGAGCCTGGCCGATCCGCTGACGCTGATCCTCGGCAGTCGTCTGGACTGGTATGACTACGACGATCGCAGTGCCGACGGTGACTTCAAGGT CACGCGCAACCTGACCCGTTACGCCGGCCTGATCTACAAACTCGATGACCATCACTCGGTCTACGCCAGCTACACCGACATCTTCACCCCGCAAACCCAG AAGGACCTCGGCGGCAAAGTGCTTGAGCCGATTGTCGGTGAAAACTACGAAGTCGGTATCAAGGGCGAATATTTCGACGGCGCGCTGAACGGCAGCGTGG CAGTGTTCCAGATGGACCAGACCAACCGCGCCACTCAGGCATCAACCCAGCTCGGCTGCCCGGAACTGACCTGCTATGAAACCTCCGGCAAGGTTCGCGC CCAAGGCGTGGACATGGAACTGCAAGGTGCACTGACCGAGCAATGGCAAGTCGGCGCCGGCTACACCTACACCCGCGCCCACTACATCAAGGACGAAAAC CCAGCGAACAATAACCAGAAATTCGACACCGACATGCCCGAGCACCTGTTCAAGGTCTCGACCGTGTACCGCTTCAAAGGCCCGCTGGAAAAACTGCGCG TGGGCGGCAACGTGTACTGGCAGAGCCGCATGTACAACGACATCTCCCTGGCCAATGGCGGCAGCTATCGTCTCGAACAGGGTGGCTACGCGGTCACCGA CCTGATGGCCGGTTACGAGGTCAACAAGCACCTCGACCTGCAGGTCAACGCCAACAACATCTTTGACCGCAAGTACTATTCCTCCATCGGCACCGACGTG ACCTGGGGCTCGACCGACAACTACGGCACGCCGCGCAGCTACATGATGACGGCCAAGTACAAGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGATAGCGCTCAGCAAGCACCACACAGGGCGCCGGGAGTTTTCCCGGTGCCCTTTTTTGCAGGTTCATTAGGCAAGGCCGGTAATTACCGATAGTCTCT GGCGACACTTTCGCGAAGCACCGGCCATGCCCCAGACAGATTTCTCCTCCGACCTCGAAGCCATCGGCAGCATTGACGCTGTGCCGGTGATCCTGAGCAT GGTCAAGCATATGACCGGCATGCGCTTCGCCGCCGTAGCGCGGGTCACCGAGAGCAAGTGGATCGCCTGCGCCGTGGATGATTCGATTGATTTCGGATTA CTGCCAGGCGGCGAACTGGTGCTCGAATCGACGATTTGTCATGAGATCCGTCAGCACCATCAGCCGGTGATCTTCGGCCATGCCAGCCAGCACCCGCTGT TCTCCACGCATCACACGCCGAAAACCTACGGTCTGGAAAGCTACATTTCCATTCCGATCATCAAGGCCGATGGCGAGTTCTTCGGCACGCTGTGCGCCAT
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| Amino Acid Sequence |
>TonB-dependent receptor
MSFHTIHRRSNLSPNLLAIAIGMASIAPALAEETAATAPTNGPLELQATEIGATQMSSTTEDTQSYTTGPMQTATKLSLTMRETPQAVTVITRQRMDDQN MTSVNDVVRGTPGLFLSEASGPGRQTYKARGFDIDNIMYDGLPSSYSPFTLAVQPNLAMFDRVEIVRGATGLVTGAGNPSAAINMVRKRPTADQRVTLTG AAGSWDDYRGEVDASSPLNDSGTLRGRVVTSYQGADSFRDKEENDHGLFYAIGEADLSDSTTATLGFSRQNDQTNYFWGGLPIGEDGHHLDLPRSTYPGT DWENRKLQVDTVFGEVEHRFDNDWKLHLGGSTSTLEGEFSGTYLSRYDGPLETTAYQSHHTDKQLAFDGFASGPFEAFGRTHELVVGASNRVYDATTKEY APYDTGLPIAAPKPDFVRSGKSRNVTTQDAVYLTTRLSLADPLTLILGSRLDWYDYDDRSADGDFKVTRNLTRYAGLIYKLDDHHSVYASYTDIFTPQTQ KDLGGKVLEPIVGENYEVGIKGEYFDGALNGSVAVFQMDQTNRATQASTQLGCPELTCYETSGKVRAQGVDMELQGALTEQWQVGAGYTYTRAHYIKDEN PANNNQKFDTDMPEHLFKVSTVYRFKGPLEKLRVGGNVYWQSRMYNDISLANGGSYRLEQGGYAVTDLMAGYEVNKHLDLQVNANNIFDRKYYSSIGTDV TWGSTDNYGTPRSYMMTAKYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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