Pseudomonas moraviensis R28-S, PMO01_07930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGCCTGATGCAGCCGTGGCGCTTCATCCGCATCAGCGATCGCGCTCTGCGCGGGCAGATCCGCGATCTGGTGGAAGAAGAGCGCATCCGCACCGCCG AAGCCCTTGGCGAGCGCAGCGATGAGTTCATGCAGCTCAAGGTCGAAGGCATCAACGACTGCGCTGAGGTGCTGGTCGCGGCGCTGATGGACGATCGCGA AAAACACATCTTCGGTCGGCGCACGTTGCCGGAAATGGACATGGCCTCGTTGTCCTGCGCGATCCAGAATCTGTGGCTGGCCTCCCGCGCTGAAGGCTTG GGCATGGGCTGGGTCTCGCTGTTCGAGCCGCAAGCGTTGGCGGATTTGCTCAAGTTGCCGGCCGGTGCCAAGCCGCTGGCGGTGTTGTGTCTGGGCCCGG TCAAGGAATTCTATCCGGCACCGATGCTGGTACTTGAAGGCTGGGCGCAGGCGCGGCCGCTGAACGAGTTGCTGTACGAAAATTACTGGGGAGTGAGTCA
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| DNA Sequence for Gene |
>PMO01_07930
ATGAGTGTGGCGTTGCTGAGTGTCGCCGCGGTAGCGCTGGATGCGCTGCTCGGTGAACCGAAACGCTGGCATCCGCTGGTGGCGTTCGGCAATTTTGCCG CGCGCATCGAGCAACGCTTCAACGCCGGCGGTCGAGGCTGGCGCAGCCATGGCGTGACCGCGTGGGTTATCGCGGTACTGCCGCTGACCTTGCTCGCCAC GGCATTTTCCTGGGCGCCCTATGTCGGCTGGATTGTCGAGATTCTGGCGCTGTATTGCGCCCTCGGCATGCGCAGCCTCGGCGAGCATGTCGCGCCGGTC GCGGCTGCGTTACGCGCCGATGATCTGGACGAGGCACGCAAGCGCGTCGGTTATCTGGTCAGCCGCCAGACCAATGAACTGGACAGCAACGCCGTGGCCC GCGCCGCCACCGAGTCGGTATTGGAGAACGGCAGCGATGCGGTGTTCGCTGCGCTGTTCTGGTTTGTCGTTGCCGGCGCGCCGGGCGTGGTCCTGTATCG CTTGAGCAATACCCTCGATGCGATGTGGGGTTATCGCAACGAACGCTTCGAGCGTTTCGGCTGGGCGGCGGCGAAAATCGACGACGTGTTGAACTACATC CCTGCGCGTCTGGTGGCATTGACCTACGCGCTGCTCGGCAAAACCCGCCTCGCGCTCAAATGCTGGCGCACCCAGGCGCCGCAGTGGGACAGCCCCAACG CCGGCCCGGTGATGGCGGCTGGTGCCGGTGCGCTGGGCGTCGAGTTGGGTGGCCCGGCGATCTATCACGGCGAACTGCATGAGCGCCCGCAACTGGGCGA AGGTGCGCCGGCCGATGCCGATTCCATCGACCGTGGCTGGCAATTGGTTCAGCGCGGCGTATGGTTGTGGCTGCTGATGCTTTGCCTGGGGGCGGAATTT TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGTGGCCGGTTGCGCAAGGCTGCACTCGATTACGGGATTGCCGAAGCCGACTGGCTCGACCTGTCCAGCGGCCTCGCGCCGTGGCCGTTCCCGATC CCGGAGATCCCGCTACGCGCCTGGGCGCGCTTGCCGGAAACCGATGACGGTCTGGAACAGGCCGCCTGCGATTATTACGGCGCCGCGCAGGTGCTGCCGG TCGCCGGCTCGCAAATGGCCATCCAGTTGCTGCCGCGTCTGCGCCGGGCCGGCAAGGTCGGCGTGTTGTCGCCGTGCTATGCCGAGCATGCCGAAGCCTG GAGGCGCAGCGGTTACATCGTCCGTGAAGTGCTCGAGCAGGAAGTCGAGTTCTTTCTCGACAGTCTCGATGTGCTGGTGGTGGTCAATCCGAACAATCCG ACCGGCCTCAGCCTGACCCCGGCACGCCTGCTCGACTGGCACGCGCGGCTGGCGCAACGCGGCGGCTGGCTGGTAGTCGACGAAGCGTTCATGGACAACA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGNFAARIEQRFNAGGRGWRSHGVTAWVIAVLPLTLLATAFSWAPYVGWIVEILALYCALGMRSLGEHVAPV AAALRADDLDEARKRVGYLVSRQTNELDSNAVARAATESVLENGSDAVFAALFWFVVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDVLNYI PARLVALTYALLGKTRLALKCWRTQAPQWDSPNAGPVMAAGAGALGVELGGPAIYHGELHERPQLGEGAPADADSIDRGWQLVQRGVWLWLLMLCLGAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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