Pseudomonas moraviensis R28-S, PMO01_05695 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas moraviensis R28-S chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGATCAGCGACCAGAAGATCAACGACAGAATGCCCAGCACACCGTCGTGATTGACCGGCACACCATAACCGCCGGAAAACACTTCCTTGAGGGTGTACAA CGGGCTCGTGCCGATGTCGCCATAAACCACCCCGACCGCCGCGACCAGCATGCTCAGCGGTCTGCTTGCCGAACCCTCGGCGCCCGCCGCATGACTACTT GCCTGACCCATCCAACACTCCTGATCTTGATACCGGCTTCTTTGAAGGAAGCACTATGCTTTGAGTTGCAGCATGCGCTGTTTTACCTGTTGTTACAGAC CAATGATTGACTGCACGAAATCGGTAAAGCTCAACGGCGCGAAGCATAGCGCAGCACTCGTCGTATTTCCCCGTATAAAGCTGGTCAAGTGCGTTGCCCG CCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCATCTCAAGCGCCCATCCGTCAGCTGCCGCGCGTGGCCAGCGACGTCACAAAACACCGAGGTTAGAC
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| DNA Sequence for Gene |
>PMO01_05695
|rimO
ATGTCCACCACTCCTGCGCCGGCCAATCCAAAGGTTGGCTTTGTATCTCTGGGTTGCCCGAAAGCACTGGTCGACTCCGAGCGCATCCTGACCCAGCTGC GCATGGAAGGCTATGACGTGGTGTCCACCTATCAGGACGCCGACGTCGTGGTGGTCAACACCTGCGGCTTCATCGATTCGGCCAAGGCCGAGTCACTGGA AGTGATCGGTGAAGCGATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAAGGCAACATCCGCGACGTACACCCGAGCGTGCTG GCCGTGACCGGTCCGCAGCAGTACGAGCAAGTGGTCAACGCCGTGCACGAAGTGGTGCCGCCGCGTCAGGATCACAACCCGCTGATCGACCTGGTGCCGC CACAAGGTATCAAGCTGACCCCGCGCCACTACGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCTCGTTCTGCATCATCCCGTCGATGCGCGG CAAACTGGTCAGCCGTCCGGTCGGTGATGTGCTCGACGAAGCTCAGCGCCTGGTGAAATCCGGCGTTAAAGAGCTGTTGGTGATCTCGCAAGACACCAGC GCTTACGGCGTTGATGTGAAATATCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAGCTTTGCGAAGCACTTAGCACGCTGGGCG TCTGGGTCCGCCTGCACTACGTTTATCCGTACCCGCACGTCGACGAGCTGATTCCACTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGATATCCCGTT CCAGCACGCCAGCCCGAAAGTCCTGAAGTCGATGAAACGCCCGGCGTTCGAAGACAAGACCCTGGCGCGCATCAAGAACTGGCGCGAAATCTGCCCGGAC CTGATCATCCGTTCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAAGAAGATTTCCAGTACCTGCTCAACTGGCTGACCGAAGCCCAGCTCGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTTGACGGCGCACCAGCGAATGATCTGGATCTGGAAGTGGTACCGGACGACGTCAAGCAGGATCGTTGGGAGCGCTT CATGGCGCACCAGCAGGCGATCAGCTCGGCACGCCTGCAAATGCGCATCGGTCGTGAGATCGAAGTGCTGGTGGACGAGGTTGACGAACAAGGCGCGGTT GGCCGCTGCTTCTTCGACGCCCCGGAAATCGATGGCAACGTGTTTATCGACAATGGCAGCAACCTGAAGCCGGGCGACAAGGTCTGGTGCAAGGTGACTG ATGCCGACGAATATGATTTGTGGGCTGAGCAGATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACCGCAAAATACCTGTGGGAGCGAGCCTGCTCGCGAATGCGCTGGGTCAGTCGCTGTAAATATTGCCTGACACAATGCCTTCGCGAGCAGGCTCGCTC CCACAAGTGAATAGCGCTGTATCCAGAAGCCCCGCTCTTTTCCGAGATACGGGGCTTTTTTGCGGCTATCGTTTAGCGGGGGACGGACTCCCTTGAACCG CACAAGAGGCACACGCACATGCGTCAGCATTCGGTCATTCACACACCGAAAATCAGCGATTACGAAGAACTGACCCGGGTCTGGGAGGCCTCGGTCCGTG CGACTCACCAGTTCCTGCCGGACAGCTACATCGAGCTGCTGCGCAATCTGGTGCTCACCCGCTATCTTGATGCGGTCATGCTGATCTGCACCAAGGATCG CCAGCAGCGCATCACCGGGTTTGCCGGTGTGGCGGCGGGCAAGATTGAAATGTTGTTCATCGATCCCGATCATCGTGGTCAAGGCTTGGGCAAGCAGTTG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVL AVTGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVDGAPANDLDLEVVPDDVKQDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAV GRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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