Pseudomonas mendocina NBRC 14162, PME1_RS01165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGCCGCGGGGTGATGCACCGGGCTTCGTGCACATCCTCGACGACCAGACCCTGCTATTGCCGGATCGCCCGGGTAACAACCGCATCGACAGCCTGCGC AATATCGTCCTGAACCCACAGGTGGCGCTGTTATTCCTGATTCCGGGCGTCGGCGAGAGCTTGCGAGTCAACGGCCGCGCCGAAATCTCCCTCGATCCCG AGTTGCTGGAACTGGGTCGGGCTCAGGGCAAACTGCCACGTAGCGTGCTGCGTATCCGCATCGACAGCTGTTACTTCCAGTGCTCCAAGGCGGCGGTGCG TTCCGGACTGTGGGATGTCTCGCGCCAGGTCGAGCGCGCCAGTCTGCCCAGTGCTGGTGATATCTTCCGCTGCATCTATGACGAGTTCGATGTCGAGGCT TACGAGCGAGACCTGCAGCAACGCCTTCGGACGAGCCTGTACTGACTGGTCCGCCATGCGCCGCTACAATTGGCGCTTTTCTGAGCGGTTGGAGTCTGTT
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| DNA Sequence for Gene |
>PME1_RS01165
GTGGAAAAACTCAAGGGCGCCCTGGTGGTGGGTTTCCTGCGCCTGTTCGCACTGCTGCCCTGGCGCGCCGTGCAGGCCGTGGGCAACGCCATCGGCTGGC TGATGTGGAAGCTGCCGAATGGCTCGCGCGACGTGGTGCGCATCAACCTGAGCAAGTGCTTCCCCGAGCTTAACCAGGCCGAGCTGGACAAACTGGTCGG GCAGAGCCTCAAGGACATCGGCAAGACCCTGACCGAAAGCGCCTGCGCCTGGATCTGGCCGGCGCAGAAATCGCTCAAGCTGATTCGCGAAGTGGAAGGC TTGGAGGTGCTGGAGAAGGCCCTGGCCTCGGGCAAGGGCGTGGTCGGCATCACCAGCCACCTGGGCAACTGGGAAGTGCTCAACCACTTCTACTGCAACC AGTGCAAACCGATCATTTTCTACCGCCCGCCGAAGCTCAAGGCGGTCGACGAGCTGTTGCAGCAGCAGCGCGTGCAGATGGGTAATCGCGTCGCGCCGTC GACCAAGGAAGGCATCCTCAGTGTCATCAAGGAAGTGCGCAAGGGCGGCGCCGTGGGTATTCCGGCTGACCCGGAACCGAGCCGTTCGTCGGGTGTTTTC GTTCCCTTCCTCGGCACCACGGCGCTGACCAGCAAGTTCGTCCCCGGCATGCTTACCGGTGGCAAGGCGGTCGGTGTGTTCCTGCATGCGCTGCGTCTGC CCGATGGCAGCGGCTACAAGGTGATCCTCGAGGCGGCGCCCGAAGGCATGTACAGCGAGAACGTCGAAGAAGGCGTGGCGGCCATGAGCGAAGTGGTATC GCGCTACGTGCGCAACTACCCGAGCCAATACATGTGGAGCATGAAGCGCTTCAAGAAACGCCCGGACGGCGAGGCCAAGTGGTACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTACTGCCAGTGAGCACGATGATGAACGAAGGCGCCTCGATGGCGCCTTTTTTCTGCCACATGCTGGGCGCCTGGACGCGAATGCGCTATTAAAGGCGA CATCGCTCGTCCAATCACATGGAGCTGTCATGCCGAACCAGCGTCAGCAGGTGCGTACCCCGATGAAGTGCCGGATCAAGATCAGCCACCCCAGCTTTGG TGAGCTGCTGGCGCAGACCCGTGACCTGTCCGATAGCGGTGTCTATGTGAAGCACCCGGACATGACCAGCCTGACAGTCGGCACCGAGGTCACCGGCCAG GTGCAGGATCTGCCCTTTCCTGCGCCGGTATTGAAGATGGAAGTGATGCGCGTGGACGCCGAAGGAGCCGGCCTGCGGTTTCTCGGCGAAGCCTGAACGG CATAGCCGGGCCGGACGTTCGCAACGAATGTTTCGGATAAATGGAACATTTTGTTACATCTGTGCTCTGATCAAGGCCTCACTCCGAGGTGGCGTCCATC
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| Amino Acid Sequence |
>lipid A biosynthesis lauroyl acyltransferase
MEKLKGALVVGFLRLFALLPWRAVQAVGNAIGWLMWKLPNGSRDVVRINLSKCFPELNQAELDKLVGQSLKDIGKTLTESACAWIWPAQKSLKLIREVEG LEVLEKALASGKGVVGITSHLGNWEVLNHFYCNQCKPIIFYRPPKLKAVDELLQQQRVQMGNRVAPSTKEGILSVIKEVRKGGAVGIPADPEPSRSSGVF VPFLGTTALTSKFVPGMLTGGKAVGVFLHALRLPDGSGYKVILEAAPEGMYSENVEEGVAAMSEVVSRYVRNYPSQYMWSMKRFKKRPDGEAKWY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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