Pseudomonas mendocina NBRC 14162, PME1_RS01055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGACCTGCCGCTGTTCATGACCGTCGGCAGCGGCAAGAGCGACTTTACCCTGGCCGACAGCGCGCCGGTGCAGAGCGTGCGCTGCGTGGCCGGGCCGA GCCGGCCGCGTGCCAGCCCGGCCCATGACAACCAGGCCTGGCGCTTGATCAGCCAGCTGTCGCTGAACTACCTGTCGCTGGCCGAGCAGGGCCAGGGCGC CGCTGCCCTGCGCGAGATGCTGCGGCTGTATGGCGATGTGCAAAATCCGGCGTTGCAACTGCAGATCGAAGGCCTGCGCGACGTCAGCGCCAAACCCTGT ACGCGGCGTTTGCCAATGCCCGGGCCAATCGTCTTTGGGCGTGGTCTGGAAATCACCCTGGAATTCGACGAGAACGCCTTCCGCGGTACCGGGGTGTTTC TCCTCGGCGCGGTGTTCGAGCGTTTCCTGGCGCGTTACGTATCCCTCAACAGCTTTACCGAGACGGTGCTGCGCAGCACCGAGCGCGGCGAGATCATGCG
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| DNA Sequence for Gene |
>PME1_RS01055
ATGGAAAGCCCGGCCCGGCCGTCGTCCGAACCTCTAGACACGCTTGCGCAGATGCAGGCGCAGCCCTGGGAGTACGACTTCTTCCAGGCCCTGCGACGCA TCGAGAACGAGCACCCGCACCTGCCGCGCCTGGGCCGTTCCCGGCGCCTGGCAGACGATCCGCTGCGCCTCGGCCAGCGCCAGGAAGGCACGTTCGCTCC AGCCACGCTGGCCGCTGTAACGCCCGGCGGCGACCAGCGTCCGGCACGCCTGGAGCAGTATTTCTTCGGCCTCGGCGGGCCCAACGGACCGCTGCCGCTG CACCTGACCGAGTACGTGCGCGAGCGTCAGCGCAACCACGCCGACAGCACCAGCAAGTACTTCCTCGACCTGTTTCATCATCGCCTGCTGAGCCTGTTCT ATCGTGCCTGGGCAGAGGCCCGGCCGACCGTCAGCCACGACCGCCCGGATGACGACTACTGGTCGGCGCGCCTGGCCGCCTTCAGCGGTCGCGGCATGCC CAGCCTGCGCCAGCCGGGCCTGCTGGATGATGCGGCGAAGCTGCACTACAGCGGTCACCTGGCCGCGCAGACGCGTTACCCCGATGGCCTCAAGGCGATC CTCGCCGACTACTTCGGTGTGCCGGTGCAGATCGAGGAATACGCCGGCAGCTGGCTCAGCCTGCCCGAGCGCACGCGCCTGGGCGTGGAGTCCAGCCAGC TGGGCGTGGACTTCTGCTTGGGCAGCCAGGTCTGGGACCGCCAGCACAGCTTCCGCATCTGCTTCGGTCCGCTGACGCTCGATCAGTACAACGCCATGCT GCCCGATGGCGAGTCGTTCGCCGCGCTGGTGGCCTGGGTCGCCGAATACCAGGGCGACGAGCTGGACTGGCAACTGAATCTCGTATTGCAGCGCGAGGAA GTCCCCGCGCTGCGTCTCAACGGCCAGGCTCGCCTGGGCTACACCACCTGGCTTGGTCAGCCACAGCACGACGCCAGGGATCTGGTGCTGGCCCGCCATC ACGCCGCAGCAACTTCGCCGGCGGATCAATCAAGGAGAACTCCACATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGTCGTACCGCGCTGTTCGGCAAGCTCAACAGCGTCGGCTACAAGGCCATCGAGGCCGCCACCGTGTTCTGCAAGCTGCGCGGCAATCCCTACGTC GAGTTGGCGCACTGGTTGCACCAGCTCCTGCAACTGCAGGACTCCGACCTGCACCGCATCATCCGCCAGTTCAGCCTGGAGCCGGCGCGCCTGGCGCGTG ACCTGACCGACGCACTCGACCGCCTGCCGCGCGGCTCGACCTCGATCACCGACCTGTCCTCGCACGTCGAGGAAGCGGTCGAGCGTGGCTGGGTCTACGG CAGCCTGATGTTCGGCGAGCACCAGGTGCGCACCGGCTACCTGATCATCGGCATCCTCAAGACGCCGAGCCTGCGCCAGGTGCTGCTGGGCCTGTCGGGC GAGTTCGCCAAGATCAAGGTGGAGACCCTGAGCGAGCGTTTCGACGAGTACGTCGGCGATTCCCCGGAGAACAACCTGGCCGCCAGCGACGGTTTCGCCG
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| Amino Acid Sequence |
>type VI secretion protein
MESPARPSSEPLDTLAQMQAQPWEYDFFQALRRIENEHPHLPRLGRSRRLADDPLRLGQRQEGTFAPATLAAVTPGGDQRPARLEQYFFGLGGPNGPLPL HLTEYVRERQRNHADSTSKYFLDLFHHRLLSLFYRAWAEARPTVSHDRPDDDYWSARLAAFSGRGMPSLRQPGLLDDAAKLHYSGHLAAQTRYPDGLKAI LADYFGVPVQIEEYAGSWLSLPERTRLGVESSQLGVDFCLGSQVWDRQHSFRICFGPLTLDQYNAMLPDGESFAALVAWVAEYQGDELDWQLNLVLQREE VPALRLNGQARLGYTTWLGQPQHDARDLVLARHHAAATSPADQSRRTPHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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