Pseudomonas mendocina NBRC 14162, PME1_RS01050

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATGACCCCGCGTGAGCGCCTGCAGCCTTCGCTGCTCGACCGCCTGACCGACGATGACCCCGGCAATCCGCAGGAAAGTGCGGACCGCCGCGTGCTCTCGC TGAATCAGCTCAAGGCCTCGGTGCTGCGTGATCTGACCTGGCTGTTCAACACCATTGCCCTGCTCGATGCCGACACCACTCGGCACACGCCAGCCGGCAC CTCGGTGATCAACTATGGGCTGCCGGCACTGGCCGGCAGCAGTGTGTCCGGTATCGACGTTGCCGCCCTGGAGAGTCTGATCCAGCGCGCCATCCTCACC TTCGAGCCACGCATCCTCGCCCATAGCCTGCGGGTGCGGGCGCATGTGGGTCATGAGCAGATGAACCACAACGCCCTGAGCTTCGAGATTCAGGGTGACC TGTGGGCTCAGCCGGCCCCCCTACCCTTGCTGCTGCGCACCGAGCTGGACCTGGAGTCCGGCCATGTGCAGGTGCTGCCCGCCGAGCAGCGGAGACGCTC
DNA Sequence for Gene
>PME1_RS01050
ATGAACCCCCGTTTGCTGGAGTTGTACAACCAGGAGCTGCAACACATCCGCGACGGCGCGGCCGAGTTCGCCCGTGAGTACCCGAAGATCGCCAGTCGCC TCAGCCTGTCCGGCCTGGAGTGCACCGACCCCTACGTCGAGCGTCTGCTGGAGGGCTTCGCCTGGCTGACGGCGCGAGTGCAGCTCAAGCTCGACGCCGA GTACCCGGTATTCACCCACAACCTGCTGGAAATTGCCTACCCGCACTACCTGGCGCCGACGCCGTCGATGACCGTGGTACAGCTGCATACCGATGCCAAC GATGGAGCGCTCAACGGCAGCTTCAACCTGCCTCGCGACAGCGTGTTGCGCGCCACCCTCGGCAAGGACAGCCAGACCCCCTGCGAATACCGCACGGCTC ACCCGGTAACCTTGTGGCCGCTACAGGTGGCGGAGGCCGAGTACATAAGCAACCCTTCCGCCGCGCTGGGTCGCCTGGCCGCCAGCGAGCCGCGTGCCAA AGCTGCGCTGCGCATCACCCTGCGCAGTGGCGCTGAAATACCCTTCGCCAGCCTGGATCTGGACAACCTGCCGCTGTACCTCAGCGGCCTCGACGAGCTG CCATTTCGTCTGTACGAGCAACTGCTGGGTAACCGCGTCGCGGTGTTCGCCCGCCAGCCGGGGCGCGACTGGGTCGAACGGCTGCCGGCCGACGCCTTGC GCCCGTGCGGCTTCGATGATGCCGAGGCGGCGCTGCCGGTAGTGCCGCAGGCCTTCCAGGGCTATCGCCTGCTGCAGGAGTATTTCGCCCTGCCGCAGCG TTTTCTGTTCGTCGACTTCTGCAATCTGCGCCGTGCCGTGCGCCAGTGCAGCGGCAACGAGCTGGAGTTGATCGTGCTGTTCGATCGCCTCGACAGCAAC CTGCAGAATCAGGTAGATGCCAGCCAGTTCCTGCCGTTCTGCACTCCGGCGATCAACCTGTTTCCGCGGCGCCTGGATCGCATCCACCTGAGCGACAAGG TGCACGAGCACCACGCCATTGCCGACCGCACACGGCCGATGGATTTCGAGATCCATTCGTTGCGCGGCGTCACCGGCCATGGCAGTGGCCCGGAGCAGAC CTTCCTGCCCTTCTATGCCGTACGTGATCCCGCTCGCTATGGGCGCGATCAGGCCTACTACATCGTGCGCCGCGAGCCGCGTGTGCTGTCGGCCGGGCAG CGCCGTAACGGTACGCGCTCCAGCTACGTGGGCAGCGAAACCTTCATCAGCCTGGTCGACAGCCACCAGGCGCCGTATCGCCATGACCTGCGCCAGCTCG GCCTCAGCGCCCTGTGTACCAACCGCGACCTGCCGCTGTTCATGACCGTCGGCAGCGGCAAGAGCGACTTTACCCTGGCCGACAGCGCGCCGGTGCAGAG CGTGCGCTGCGTGGCCGGGCCGAGCCGGCCGCGTGCCAGCCCGGCCCATGACAACCAGGCCTGGCGCTTGATCAGCCAGCTGTCGCTGAACTACCTGTCG CTGGCCGAGCAGGGCCAGGGCGCCGCTGCCCTGCGCGAGATGCTGCGGCTGTATGGCGATGTGCAAAATCCGGCGTTGCAACTGCAGATCGAAGGCCTGC GCGACGTCAGCGCCAAACCCTGTACGCGGCGTTTGCCAATGCCCGGGCCAATCGTCTTTGGGCGTGGTCTGGAAATCACCCTGGAATTCGACGAGAACGC CTTCCGCGGTACCGGGGTGTTTCTCCTCGGCGCGGTGTTCGAGCGTTTCCTGGCGCGTTACGTATCCCTCAACAGCTTTACCGAGACGGTGCTGCGCAGC ACCGAGCGCGGCGAGATCATGCGATGGAAAGCCCGGCCCGGCCGTCGTCCGAACCTCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACACGCTTGCGCAGATGCAGGCGCAGCCCTGGGAGTACGACTTCTTCCAGGCCCTGCGACGCATCGAGAACGAGCACCCGCACCTGCCGCGCCTGGGCCG TTCCCGGCGCCTGGCAGACGATCCGCTGCGCCTCGGCCAGCGCCAGGAAGGCACGTTCGCTCCAGCCACGCTGGCCGCTGTAACGCCCGGCGGCGACCAG CGTCCGGCACGCCTGGAGCAGTATTTCTTCGGCCTCGGCGGGCCCAACGGACCGCTGCCGCTGCACCTGACCGAGTACGTGCGCGAGCGTCAGCGCAACC ACGCCGACAGCACCAGCAAGTACTTCCTCGACCTGTTTCATCATCGCCTGCTGAGCCTGTTCTATCGTGCCTGGGCAGAGGCCCGGCCGACCGTCAGCCA CGACCGCCCGGATGACGACTACTGGTCGGCGCGCCTGGCCGCCTTCAGCGGTCGCGGCATGCCCAGCCTGCGCCAGCCGGGCCTGCTGGATGATGCGGCG
Amino Acid Sequence
>type VI secretion system protein ImpG
MNPRLLELYNQELQHIRDGAAEFAREYPKIASRLSLSGLECTDPYVERLLEGFAWLTARVQLKLDAEYPVFTHNLLEIAYPHYLAPTPSMTVVQLHTDAN DGALNGSFNLPRDSVLRATLGKDSQTPCEYRTAHPVTLWPLQVAEAEYISNPSAALGRLAASEPRAKAALRITLRSGAEIPFASLDLDNLPLYLSGLDEL PFRLYEQLLGNRVAVFARQPGRDWVERLPADALRPCGFDDAEAALPVVPQAFQGYRLLQEYFALPQRFLFVDFCNLRRAVRQCSGNELELIVLFDRLDSN LQNQVDASQFLPFCTPAINLFPRRLDRIHLSDKVHEHHAIADRTRPMDFEIHSLRGVTGHGSGPEQTFLPFYAVRDPARYGRDQAYYIVRREPRVLSAGQ RRNGTRSSYVGSETFISLVDSHQAPYRHDLRQLGLSALCTNRDLPLFMTVGSGKSDFTLADSAPVQSVRCVAGPSRPRASPAHDNQAWRLISQLSLNYLS LAEQGQGAAALREMLRLYGDVQNPALQLQIEGLRDVSAKPCTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVSLNSFTETVLRS TERGEIMRWKARPGRRPNL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site