Pseudomonas mendocina NBRC 14162, PME1_RS01000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCTGGGCCTGGTGCTGGCAGGCCTGGGCAGCGGCTGCAGCAAGGACGCGATGGACGACAGTGCTGCAGCTCAGGGGCCAACCAGCGTCGTGCTGCAGC TGCAGGCCGGCGATGAACTGAACCCCACCGTCGAAGGCCATAGCGCCCCGGTGCGTGTGCGCCTGCTGGAGCTGCGCAGCGCCGCCGCATTCAGCCGGAC CGACTACTTCAGCCTCGCCGAGCGCGCGGCTGCGACCCTGGGCGGCGAGCTGGTGGCCGAGGACGAATGGCTGGTCCATCCCGGCCAGACCCGGGAACTG AAACGCACGCTCGCCCGGGAAACTCGTCATCTCGGCCTGCTGGTCGGCTACCGCGAAATTGACCGGGCGCAGTGGCGCGTGGTGCTGGAGCCGAAGCAGG GCACCCTCAGCCATTACCGCATCGACCTCGGGACCCACGCCGCCAGCGCCGCTGAGCTCAACGCGCCGTCCCGCCTCGACTCTCGCTAACAGGAGCCTGT
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| DNA Sequence for Gene |
>PME1_RS01000
ATGTCCTGGAACAACCGTGTGATCTGGTCCGAAGGCATGTTCATCGGCACCCAGCATTTCCAGCAGCATGACCGCTACCTGGAGGCACTAATCGATGCCC GCAGTCGCCCACTGTCAGCCGCCGGCTGGGGTTTCGCCGAGCTGCAGCTGGATATCGGCCTGCTGGCACAGGGCAAGTTGGCCATCGTCAGCGCTCGCGG CCTGTTGCCCGACGGCACACCCTTCAACATCCCCCAGGATGACGTGGCGCCGGAGCCACTGGATATCCCCGACGACCTGCGCGACGGCGTGATCTATCTG GCCCTACCGCTGCGCCGGGCGGGTGTGCGAGACACCGTGGAAGCGGGTGAAGCGCTGGGCGGCGCGCGCTATCGCGGCCAGGTCCGCGAAGTGCGCGACG ACAACGCCGCGTTTGAAAGCCGTGTGCCGGTGATGGTTGGCGAACGCGCCCTGCGCCTGTTGACCGCCGCCGATGGCCTGCAGGAATACGCCGTGCTGGG CGTGGCGCGCGTGCGGGAAAAACGCGCCGACCGCGCCCTGGTGCTGGACGAACAGTACATCCCGCCGCTGCTCGACGTAGCAGCCAGCGCGCCACTGGCT GCCTTTCGCGGCGAGCTGCTGGGCTTGCTGCATCAGCGCGGCGAAGCCCTGGCCGGGCGCGTGGTGGCCTCCAGCGCTGGCGGCGCCTCGGAAATCGCCG ACTTCATGCTGCTGCAACTGGTCAACCGCGCGCAGCCGCTGTTCGCCCACCTGGCGCAGATGCAGCCCCTGCACCCGGAGCGCCTGTACAGCGAATTGCT GGCTCTGGCCGGCGAGTTCGCCACCTTCTCCAACGCCGCGCGCCGGCCGCTGGAGTTCCCGCCCTACATCCACGATGACCTGCAGGCCAGCTTCACTCCG GTGATGCAGGCACTGCGTGAAGCCTTGTCGATGCTGATCGACAGCAAGGCCGTAGCCATTCCCATCGTCGAGAAGGCCTACGGCGTGCACGTGGCCATGC TGGCTGACCGCAGCCTGCTGGACAGCGCCAGCTTCATCCTCGTGGTCCGCGCCGACATGCCTGCCGAGACCCTGCGCGGGCGCTTCGGCCAGCAGAGCAA GATCGGCTCGGTCGAGCACATCCGCGATCTGGTCAACCTGCAGCTACCGGGCATCAACCTGCTGCCGCTGCCGGTGGCCCCGCGCCAGATTCCGTTCCAC GCCGGCTCGACCTACTACGAGTTGGACCGTGGCAGCGAACACTGGAAGCAACTGGCGCAATCCGGCGGCTTCGCTTTCCACGTGGCGGGCGAATACCCCG GCCTGAACCTGGCCTTCTGGGCGATACGGGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCATGACCGATCAAGACGACTGGCTGAACAAGCCGCCAGCAGCGCAACCGGCGAACAACGATCGCACCCAGTTCATGCCGCGCCCCGGTGGTCGTGCTC CGCAGGCGCCAGCCGAGGCCCCGGCAGCGCCGCTGCAGATGCCGGCTGCGCCGCTACCGGCGGGCCAGGCCCGTGGCATGAACCCGCTGGAGCAGGCCGC CGGGCCGCTGCTGAGCATGCTCACCCGATTGCGCAGCACCTTGGCCCATCCCGCTCCAGCCAGCCTGCGCGCGCAGCTGCTGGGCTACCTGCGCCAGTTC GAACAGCGCGCCGAGGCCGCCGGTGTGCCGCGCAACGACGTGTTGCTGGCGCGCTATGCGCTGTGCACCGCCCTCGACGAGGCGGTGCTGAGCACGCCCT GGGGCAGCACCAGCGAGTGGGGCAAGCAAAGCCTGCTGATCACCGTGCACAACGAGGCCTGGGGCGGCGAGAAGGTGTTCCAGCTGCTCGAACACTGCCT
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| Amino Acid Sequence |
>type VI secretion protein
MSWNNRVIWSEGMFIGTQHFQQHDRYLEALIDARSRPLSAAGWGFAELQLDIGLLAQGKLAIVSARGLLPDGTPFNIPQDDVAPEPLDIPDDLRDGVIYL ALPLRRAGVRDTVEAGEALGGARYRGQVREVRDDNAAFESRVPVMVGERALRLLTAADGLQEYAVLGVARVREKRADRALVLDEQYIPPLLDVAASAPLA AFRGELLGLLHQRGEALAGRVVASSAGGASEIADFMLLQLVNRAQPLFAHLAQMQPLHPERLYSELLALAGEFATFSNAARRPLEFPPYIHDDLQASFTP VMQALREALSMLIDSKAVAIPIVEKAYGVHVAMLADRSLLDSASFILVVRADMPAETLRGRFGQQSKIGSVEHIRDLVNLQLPGINLLPLPVAPRQIPFH AGSTYYELDRGSEHWKQLAQSGGFAFHVAGEYPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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