Pseudomonas mendocina NBRC 14162, PME1_RS00925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACTAGGGTCGGAATGACCCTGGTTTAAAGAGACCGGCAATTCTAGAGAAAGCCGCGCGGTAGGTCAATTTCCAACCAACCTTATTCGCCAGATAGAAA TAGAAAGAAGGAAAAGGGTTTAAAGCTCTTTTTCTATGTTTATGTTGATTAGTCTTGGCTTGGGTTGTGGACAACCCTCTGATTGCTACGTACTCATTGA TCCAGCGCCAAGGATAAGCCTGTCCAAAAGGCGTGCTTGCGCTGTGAGTGTCCTGGCCACAACCTGAGGATGGAATACCGCTTTACCCACAGCCCGGTTA TCCGCATGTTCATCCCCAGAGTTTTGCAGAAGCTTATTGGGTGCTTATCCACAAGCTTTTACTGGCGGCTGATAAGCCTGATGAATGAAACTAAGGCTTT GATTTTACTTGGCCATCTCGCTCAGGTTGTGTGGATAACTCGGTCTGGGGCCGTTACAATGGCGACTGTTTCGGATCGCCGCCTGGATAGGGGATAGTCA
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| DNA Sequence for Gene |
>PME1_RS00925
GTGTCAGTGGAACTATGGCAGCAATGCGTCGAGCTTCTGCGCGATGAGTTGCCGGCCCAGCAATTCAACACCTGGATCCGTCCTCTGCAGGTCGAAGCCG AAGGCGACGAACTGCGTGTGTATGCGCCCAACCGTTTCGTGCTCGACTGGGTCAACGAGAAGTATCTGAGCCGTTTGCTCGAGTTGCTCGGTGAACGTGC AGGCGGTCTGGTTCCCGCGCTTTCCCTATTAATAGGCAGCAAGCGTGCCGCCACTGCTCGGGTTGCACCCACTGCCCCCCTGCCCGCGGCTGCGCGCGCT GCTCAGGTTCAGGCTGCCGCTGCAGTGAGCAAGCCGCTTCCTCCGCCCGTGCAGGAGGAACCTTCGCGAGCCAGCTTCGATTCGATGGCCGGTTCGGCGC CGCAACCGCCAACCCCTGCCGTGGCACCTCGCACCGAGCGTACCGTGCAGGTTGAAGGTGGGCTCAAGCACACCAGCTACCTCAACCGCACCTTTACCTT CGATAACTTCGTCGAGGGTAAGTCGAACCAGTTGGCTCGTGCTGCTGCTTGGCAGGTGGCAGACAATCCCAAGCACGGTTACAACCCGTTGTTCCTGTAT GGCGGTGTGGGCCTGGGCAAAACTCACCTGATGCATGCCGTTGGCAACCACCTCCTGGCGAAGAATCCCAATGCCAAGGTGGTGTACCTGCATTCCGAAC GCTTCGTCGCCGACATGGTCAAGGCGTTGCAACTCAACGCCATCAACGAGTTCAAGCGCTTCTATCGTTCTGTGGACGCACTGCTGATCGATGACATCCA GTTCTTCGCCAAGAAGGAGCGCTCCCAGGAAGAGTTCTTCCACACCTTCAACGCATTGCTCGAAGGTGGCCAACAGGTGATTCTCACCAGCGACCGTTAC CCGAAGGAGATCGAAGGTCTCGAGGAGCGTCTGAAGTCGCGCTTTGGCTGGGGCCTGACCGTCGCGGTGGAGCCGCCGGAACTGGAAACCCGCGTGGCGA TCCTGATGAAGAAGGCCGACCAGGCCAAGGTGGATCTGCCGCATGATGCCGCATTCTTCATCGCTCAGCGCATTCGTTCCAACGTACGTGAGCTGGAAGG CGCGCTGAAACGGGTGATCGCGCACTCGCACTTCATGGGTCGCGACATCACCATCGAGCTGATCCGCGAGTCGCTCAAGGATCTGCTGGCCCTGCAGGAC AAGCTGGTCAGCATCGACAACATTCAGCGCACCACGGCCGAGTACTACAAGATCAAGATCACTGATCTGCTTTCCAAGCGTCGTTCACGCTCGATTGCCC GGCCGCGTCAGGTGGCCATGGCATTGTCCAAGGAATTGACCAATCACAGCCTGCCGGAAATCGGTGTGGCCTTCGGCGGTCGTGATCACACCACGGTGTT GCACGCTTGCCGTAAGATTGCTGAACTTAGGGGATCCGACGCGGACATCCGCGAGGACTACAAGAACCTGCTGCGTACGCTTACAACCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCAGCTCCACGAGGCAAGGGACTAGACCATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCTCTGCAACTGGTCGCCGGTGTCGTGGAACGAC GCCAGACGCTGCCGGTTCTGTCCAACGTCCTGCTGGTGGTCGAAGGCCAGCAGCTGTCGCTGACCGGTACCGACCTCGAGGTCGAACTGGTTGGCCGCGT TACGCTGGAAGATGCTGCCGAGCCAGGCGAGATCACCGTGCCGGCGCGCAAGCTGATGGATATCTGCAAGAGCCTGCCGTCCGATGCACTGATCGACATC CGCGTCGATGACCAGAAGCTGTTGGTAAAGGCCGGTCGCAGCCGTTTCACCCTGTCGACACTGCCAGCGAATGACTTCCCCACCGTGGAAGAGGGCCCAG GCTCGCTGACCTTCAACCTGCCGCAAGCCAAGCTGCGTCGTTTGATCGAGCGCACCAGCTTCGCCATGGCCCAGCAGGACGTACGCTACTACCTCAACGG
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| Amino Acid Sequence |
>chromosomal replication initiator protein DnaA
MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLSRLLELLGERAGGLVPALSLLIGSKRAATARVAPTAPLPAAARA AQVQAAAAVSKPLPPPVQEEPSRASFDSMAGSAPQPPTPAVAPRTERTVQVEGGLKHTSYLNRTFTFDNFVEGKSNQLARAAAWQVADNPKHGYNPLFLY GGVGLGKTHLMHAVGNHLLAKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKERSQEEFFHTFNALLEGGQQVILTSDRY PKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQD KLVSIDNIQRTTAEYYKIKITDLLSKRRSRSIARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAELRGSDADIREDYKNLLRTLTT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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