Pseudomonas mendocina NBRC 14162, PME1_RS00085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGATTTATGTACCCAAGGGCCTGTTCGCACTCATACAGATCTTCAGCAATACCTTCAAATTCATCATCGTACTTCTGCTGCTGCTGGGCTTCCTCGTG GTCACCGGCAAAACGCCAGGCATGCAATGGCTAGGCTTGCTGCCGGTGATCCTGACACAACTATTGCTCATCATCGCTGTCGGGCTGCTCCTGGCGGCGA TCATCCCATTCGCCCAGGACCTGAAACTGGTGGTTGATAATTTGCTGATGCTCATGATGTTCATGTCCGGCATATTCTTCAGCGCGGATCAGGTGCCGGA ACACATGCGCGGGGCCTTTGAGTACAACCCGATGGTGCTGTTGATTGGCGCATATCGTGACATCCTCTTGCGAGGTGAGTGGCCACATTGGTCCTCGCTC GGTTACTGCATAGCGTTATCGCTGCCCATCCTGGGCTTGGCGCTGCTGACACTGGCACGCAACGAACGCCGCTATCCCAAACTGCTGTACTGAGACCGCG
|
|
| DNA Sequence for Gene |
>PME1_RS00085
ATGAACGATCAGGTAATTCTCGAAGCCCGTAATGTAGGGCTGTCTTATCGTCAGCGCACCGGCGTTCTGCGCTACAACCAGTTCTGGGCTCTAGACGATG TGAGCTTTACGCTGAAAGCAGGCGAAACGCTCGGCGTGATCGGCGCCAATGGCGCAGGCAAGAGCACGTTGCTGCGCATGATCGCAGGTATCACCGAACC CGACAGAGGCAAGCTTTGGCGCCAGCCAGGTCTAAGCGCGAGCTTGCTGGCACTCAGCGTTGGCTTCAAGCCGGAGCTCTCGGGGCGCGAGAACGTAATA ATCGGCGGCCTGCTGCTGGGGCTGTCTCTCAAACGCGTCCGCGCACTGATGGATGAAATTCACAGCTTCAGTGAACTTGGCGCGTTCTTCGAACGTCCTG TGGGCACCTACTCCACAGGCATGCGCGCACGCCTGGGATTTGCCGTAGCCATTCATGCCGACCCGGACATCATGCTGATCGACGAAGTGCTGGGCGTGGG CGATGAGAGCTTCAAGCTCAAGTCTCATCAGGCAATGCGTGACAAGATTCGCGCCAGAAAAACCGTCGTGCTGGTTTCTCATAGCATGGAGGCCATCGAA TCACTCTGCGATCGGGTCCTTTGGCTTCATGAGGGCCGTAGCCTTATCTGTGGACCTAAAGACGAAGTCATACGCGGCTATCTGGAAACCATTCGCCTTG CCGTCAAGGCTGAGCAGGCCAAAGAGCGTGCTGCAAAGAAAAACCAGGCGGTAGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACGCACCGAACAGACCTACACCTCCGTTCGAACAATAAAAATGAGACCAGAAATTCGCTGGTTCTGAGGTTTAAATGAGCGTAGAGCAGACGAAAATCA TCGTCGTCTTGGGTATGCACCGCAGCGGCACCAGCGTAGTAACCCGCACCCTCGAAGCGCTTGGCATCAGCCTTGGCGAGAATCTGATGCCACCAGCCGA AAACAACAACGAAAAAGGCTTTTTTGAAGATCTGGCCATCGTCTCGATCAACGACGATCTCATGCGCTCAGACGGGTTCGACTGGCAATGCCTGGCGGGA GGCAGCCAAACCAACTGGGCAAATTTGTGTGAAAGCGCTCAAGGGCAGCGCGCCATTGCCTATCTAGGGGAAATGCTCGAAAAGCATCCTCGCCTTGGGC TGAAAGATCCCCGCATGCCGCGCCTGCTGCCGTTCTGGAAGGCGGTTTTCCGACATATGCAGTTGGAGCCGCTTTTTCTGATCAGTAGTAGGGACCCTCT
|
|
| Amino Acid Sequence |
>ABC transporter
MNDQVILEARNVGLSYRQRTGVLRYNQFWALDDVSFTLKAGETLGVIGANGAGKSTLLRMIAGITEPDRGKLWRQPGLSASLLALSVGFKPELSGRENVI IGGLLLGLSLKRVRALMDEIHSFSELGAFFERPVGTYSTGMRARLGFAVAIHADPDIMLIDEVLGVGDESFKLKSHQAMRDKIRARKTVVLVSHSMEAIE SLCDRVLWLHEGRSLICGPKDEVIRGYLETIRLAVKAEQAKERAAKKNQAVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|