Pseudomonas mendocina NBRC 14162, PME1_RS04300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCTCGTGCAGATGGTTGATGAACTGCGCTAGCTTGGGGAGCAAATTTGGCCACGCTTCCGAATCAGTTTTCAAAATTTGGGAGAGCGTTTTGCCCGGCA GTGGCCGGTAAAGTACGGCCGTCCAAGCTGGATCGTCCAGCTGGTAAAGCTTCAATGGAGTGAGCGTGGGAATACCACGCTGATGAAGGCTTACAGCGTT TGTGCAGAAGCGTAACGATTGCGGGCGCAGCAAGGCAGACGAAAACAGGCGCTTGCGGCGGAAGAGCTTGAGCATGTTCCCATCACTAAGCTCATACACC TTCGGGCCAAAGCTGTCCTGCTCCAAGATGCTGGCATCCTCGGTCATTTCGTTAAGCGATGTGTTGGGAAGATGGATGAAGGTCAGCACATTGGGGGGCC TTGTTTGTCGCGGAGCTGCATATGATGCCCGATCTTGCAAGGGCGCGGCCATGATATCGGGAGTGTTAAGATTGTCGCCCCTTTACGGTTGAAAGCGGAT
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| DNA Sequence for Gene |
>PME1_RS04300
ATGACAGAAAATCCCCAGCAGAACGCTGCTACCAGCGTCGCTATTTATCTTCGGTTGCTGGCTTACGTGAAGCCGTATGTTGGTTTTTTCCTGCTTAGCA TCGTCGGCTTCCTGATCTTCGCTTCCACCCAGCCTATGCTGGGCTACATCCTCAAGTACTTCGTCGATGGACTGTCCAATCCCGAGGCCAGCCTGTTCGA GGGCGTTCCGTGGTTGTTGGAGCATGCTCCCTGGCTGGCGCACCTGAAGCTGCTGCAGGCTGTGCCGTTGTTGATCGTACTGATCGCTTTGTGGCAGGGG ATTGGCTCGTTTCTGGGCAACTATTACCTGGCCAAGGTCTCCATGGGACTGGTGCAGGACTTGCGCATCGCGCTGTTCAACAACCTGCTGACGCTGCCCA ATCGCTATTTCGACAACCACAACTCCGGTCACCTGATTTCACGCATCACCTATAACGTGACCATGGTCACGGGTGCTGCCACGGATGCGATCAAGGTGGT GGTTCGTGAAGGGATGACGGTGATCTTCCTGTTCGCCACCCTGCTGTGGATGAACTGGAAGCTGACACTCGTAATGGTGGCCATTTTGCCGGTCATCGGG CTTATGGTGACCAGCACCAGCAAGAAGTTTCGCAAGCAAAGCAAGAAAATTCAGACCAGTATGGGGGACGTCACTCATGTGACCTCGGAGAGTATCCAGG GGTATCGTGTGGTACGTAGCTTCGGCGGCGAGGACTACGAGAAGCAGCGCTTTCTCGAGGCCAGCGAAGAGAACAAGCTCAAGCAGCTGAAGATGGTCAA GACCAACGCCGTCTATACCCCGTCGCTGCAACTGGTTATTTACAGTGCCATGGCGGTGCTGATGTTCCTGGTATTGTGGCTGCGCGGTGACTCGTCTGCT GGTGATCTGGTCGCCTATATCACCCTGGCCGGCTTGCTGCCCAAACCCATCCGTCAGCTGTCGGAAGTCAGCTCCACCATCCAGAAGGGCCTGGCCGGTG CCGAGAGCATTTTCGAGCAGCTCGACGAGTCTCCTGAGGTGGATCACGGCACTCAGGAGCGTGAGCGCATCAGCGGTCGCCTCGAGGTTCGTGATCTGAG CTTCAGCTACCCAGGTTCGGAAAAGCCCGTGCTGAACGACATCTCCTTCGTTGCCGAGCCAGGGCAGATGGTGGCACTGGTCGGTCGCTCCGGTAGCGGT AAGTCGACCCTTGCCAACCTGATCCCGCGTTTCTATCACCACGAACAGGGCAGCATTCTGCTCGATGGCCTTGATGTGGAGGATTACACCCTGCGCAACC TGCGCCGCCATATCGCACTGGTGACCCAGCATGTCACGCTGTTCAACGACACCGTGCGCAACAACATCGCTTACGGTGATCTGGCTGGTGCATCGCTAGA GGCCGTTCAACAGGCGGCAGGTGACGCTTATGCGGCGGAATTCATCGAGAAAATGCCTCAAGGCTACGACACTCTGGTCGGTGAGAATGGTGTATTGCTC TCCGGCGGCCAGCGTCAGCGCCTTGCCATTGCGCGTGCGCTGCTCAAGGATGCACCGCTGCTGATTCTCGACGAGGCCACTTCGGCGCTGGATACCGAGT CCGAGCGGCATATCCAGGCTGCACTGGACCAGGTGATGCAGGGCCGTACCACGCTGGTGATCGCGCACCGCCTGACCACGATCGAGAAGGCCGACCTGAT CCTGGTGATGGATCAGGGGCAGATAGTCGAGCGCGGCAATCATGCCGAACTGCTTGCGCAGAACGGCTACTATGCGCGGCTGCATGCCAAGCAATTCGAA GAGACCTCCGATGTCTCCGGCAGCGAGCACGGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTGAACCGTCTACCATTCTGGCGGGAGCGCGGCTGGACCGCGATCTCTGCTACTGAATATGCAGATGCCTGGGCGCGTTTTGGCGGAAGCGTGGCAAC CCATCCCGAGGTGGTTGCACGCTTGGCCGACTTGGCCGGTATCCCCGTGCGCTATCTGGGTTGGCTCGTGGATGACCAGTTGCAGGCGGCGATACCGACA TGGGGCCGATACCTGGCTCTGTCCAAGGACGTATTGAAACAGCAGGGCAGGCGAGGACTGTTCGATCTGGGCAACGCGGAGATCATTCTGCCTGTGGCTG CAGATGCGCGCGTTCCGCTGCGCCATTGCGCCCGCTACCTTTCCGAGCTCAATGTCGCTCAATTGATCGGTGTCAGTGAGCAGCCCGAGGGCCTGGCGCT TGCCCGTGAGCCTGAGCAGTACAGCAAGAAGTTCCGCTACAACCAGCGCCGCGAGCAACGTTTGCTGGAAGAAGCGGGCGGAGTAATCCGTCCGATGCTG
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| Amino Acid Sequence |
>lipid transporter ATP-binding/permease
MTENPQQNAATSVAIYLRLLAYVKPYVGFFLLSIVGFLIFASTQPMLGYILKYFVDGLSNPEASLFEGVPWLLEHAPWLAHLKLLQAVPLLIVLIALWQG IGSFLGNYYLAKVSMGLVQDLRIALFNNLLTLPNRYFDNHNSGHLISRITYNVTMVTGAATDAIKVVVREGMTVIFLFATLLWMNWKLTLVMVAILPVIG LMVTSTSKKFRKQSKKIQTSMGDVTHVTSESIQGYRVVRSFGGEDYEKQRFLEASEENKLKQLKMVKTNAVYTPSLQLVIYSAMAVLMFLVLWLRGDSSA GDLVAYITLAGLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDESPEVDHGTQERERISGRLEVRDLSFSYPGSEKPVLNDISFVAEPGQMVALVGRSGSG KSTLANLIPRFYHHEQGSILLDGLDVEDYTLRNLRRHIALVTQHVTLFNDTVRNNIAYGDLAGASLEAVQQAAGDAYAAEFIEKMPQGYDTLVGENGVLL SGGQRQRLAIARALLKDAPLLILDEATSALDTESERHIQAALDQVMQGRTTLVIAHRLTTIEKADLILVMDQGQIVERGNHAELLAQNGYYARLHAKQFE ETSDVSGSEHGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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