Pseudomonas mendocina NBRC 14162, PME1_RS03550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCATGACCATCGTGCGCGAGGAAATCTTCGGTCCGGTGATGAGCATCCTCATCTACGACGACGAAGAGGAAGTGATTCGCCGCGCCAACGACACCGA TTACGGCCTCGCTGCCGGCGTGGTGACCCGCGACCTCAACCGTGCACACCGGGTGATCCACAAGCTGGAAGCCGGCATCTGCTGGATCAACACCTGGGGC GAGTCGCCAGCCGAGATGCCAGTGGGCGGCTACAAGCAATCCGGTGTCGGCCGCGAGAACGGTCTGGTCACCCTCGGCCACTACACCCGCATCAAGTCGG TGCAGCTGGAAATGGGCGATTACGCGTCAGTGTTCTGAACACCGTTTTGTGGGAAGGGCTTCAGCCGCGACCCATTTCGCGGCTAAAGCGGTTCACCGCC CGGCCCGCCCATGGATTGAATCGCCGCCCCGCAGCCCGGATGCCATCCGGGGACATTCATCCAGGTTTACCCGGCGGGCAGCCGGGCAACAGGAGGAAGC
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| DNA Sequence for Gene |
>PME1_RS03550
ATGACCCAGGAATTCGACTACATCATCATCGGCGCCGGCTCGGCCGGTAACGTCCTGGCCACTCGCCTGACCGAGGATGCCGACGTCAGCGTGCTGCTGC TCGAAGCCGGCGGCCCCGACTATCGTCTCGATTTCCGCACTCAGATGCCCGCTGCCCTGGCCTTCCCACTGCAGGGTCGACGCTACAACTGGGCCTACGA AACCGATCCAGAACCTTACATGAACAACCGCCGCATGGAATGTGGACGTGGCAAGGGCCTGGGCGGCTCGTCGTTGATCAACGGCATGTGCTACATCCGC GGCAACGCGCTGGACTTCGACAACTGGGCCAAGCAGCCAGGCCTGGAAGACTGGAGCTACCTCGACTGCCTGCCGTACTTCCGCAAGGCCGAGACTCGCG ACATTGGCGCCAACGATTACCACGGCGACAGCGGTCCGGTCAGCGTGACCACGCCCAAGGCCGGCAACAACCCGCTTTTCCACGCCATGGTCGAGGCCGG CGTGCAGGCCGGCTACCCGCGTACCGACGACCTCAACGGCTACCAGCAGGAAGGTTTCGGGCCGATGGACCGCACCGTGACCCCGGAAGGTCGCCGCGCC AGCACCGCCCGCGGCTACCTGGACCAGGCCCGCGAGCGGCCGAACCTGACCATCGTCACCCACGCCACCACCGACCGCATCCTGTTCGAAGGCAAGCGCG CGATTGGCGTCAGCTACCTGCGCGGCAATGGCAACACCACCATCCGCGCCCGCGCTCGCCGCGAAGTCCTGCTGTGCGCCGGTGCCATTGCCTCGCCACA GATTCTGCAGCGTTCCGGCGTCGGCCCCAGCGACCTGCTGCTGGGCCTGGACATCGACGTGGTGCATTACCTGCCCGGCGTCGGTGCCAACCTGCAGGAC CATCTGGAAATGTACCTGCAGTACGCCTGCACCCAGCCAGTGTCGCTGTACCCGGCACTCAAGTTGCTCAACCAGCCGGGCATCGGCGCGCAATGGCTAT TCACCGGTAACGGCATCGGCGCCAGCAATCAGTTCGAGGCCGGCGGCTTCATCCGCACCCGCCCGGAGTTCGCCTGGCCCAACATCCAGTTCCACTTCCT GCCGGTGGCGATCAACTACAACGGCAGCAACGCGGTGAACGAGCACGGATTCCAGGCCCACGTCGGCTCCATGCGCTCACCGAGCCGTGGCCGCGTGCGC CTGAAGTCCAAGGACCCGCGCCAGCACCCGAGCATCCTGTTCAACTACATGAGCCATGAGCAGGACTGGCAGGAATTTCGCGACGCCATCCGTATCACCC GCGAGATCATGGCGCAGCCGGCACTGGACCCTTACCGCGGCCGCGAGATCAGCCCCGGCATTGACTGCCAGAGCGACGCCGAACTGGACGCCTTCGTCCG CGAGCACGCCGAAACCGCCTTCCACCCATCCTGCTCGTGCAAGATGGGCGAGGACGACATGGCGGTGGTCGACGGCCAGGGCCGTGTGCACGGTGTGCAG GGCCTGCGTGTGGTGGATGCGTCGATCATGCCGGAGATCATCACCGGCAACCTCAACGCCACCACCATCATGATCGCCGAGAAGATCGCCGACAAAATCC GCGGTCGCCAACCACTGCCGCGCAGCACAGCGCCCTACTTCGTCGCAGGCGATCGCCCCGTGCGTGGCACGCCGCTGCGCAGCCAGCACGACAGGCTAGT CGGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCTGACGAATCATCCAGTGCCCCTCGGGCGGCATCAACCGACCGAGGTCGAAGCGCTCCAGCGATCCGGCATCGAGCATCTCGATGCGCGGGCTCACC AGTTGCGGCAGCTTCTCGCCTTGCAGGCCACGCACCACCAGATCCAGTGCAATACGCGCCTGAATCACCGGTGAGTCGGTCGGCGCTGCCAGCACCTGGC CTTCGCGAATCTGCTCCAGTACCCGCTCGGTGGCGTAAAGCGACAACACCTGAGCATCGGAGCCGATGTTGCGCACCAGTTGCGCGGCGAAGGCCGCCGC TTCAGCATTGGCGATCACGTAATCGAGATGGGGATGCTGCTTGAATAGCTCCCGCGCCAGTTGCGCCTGCCGGCTGCGATCCACCGGGCCGTAACCGCCA TGGGCCAGGGTCACCCTGGTTCCGGGCAGCGCGTCGCGCAGACCGCGCTCGGCATCCTGCACCCAACCAGCATCGGCCGGCCCCGGCAGCCAGCCGACCT
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| Amino Acid Sequence |
>choline dehydrogenase
MTQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPYMNNRRMECGRGKGLGGSSLINGMCYIR GNALDFDNWAKQPGLEDWSYLDCLPYFRKAETRDIGANDYHGDSGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPEGRRA STARGYLDQARERPNLTIVTHATTDRILFEGKRAIGVSYLRGNGNTTIRARARREVLLCAGAIASPQILQRSGVGPSDLLLGLDIDVVHYLPGVGANLQD HLEMYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQFEAGGFIRTRPEFAWPNIQFHFLPVAINYNGSNAVNEHGFQAHVGSMRSPSRGRVR LKSKDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDPYRGREISPGIDCQSDAELDAFVREHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQ GLRVVDASIMPEIITGNLNATTIMIAEKIADKIRGRQPLPRSTAPYFVAGDRPVRGTPLRSQHDRLVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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