Pseudomonas mendocina NBRC 14162, PME1_RS08525

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0004252	serine-type endopeptidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00834	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006508	proteolysis	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02163	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005515	protein binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00228	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00228	pdz_new	IPR001478	PDZ domain	269	351	7.5E-14
SUPERFAMILY	SSF50494	Trypsin-like serine proteases	IPR009003	Peptidase S1, PA clan	27	261	7.02E-69
PANTHER	PTHR22939	SERINE PROTEASE FAMILY S1C HTRA-RELATED	-	-	27	361	9.0E-95
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	223	240	9.2E-53
Pfam	PF13365	Trypsin-like peptidase domain	-	-	97	230	5.8E-34
Pfam	PF02163	Peptidase family M50	IPR008915	Peptidase M50	238	385	2.5E-9
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	167	191	9.2E-53
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	127	147	9.2E-53
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	201	218	9.2E-53
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	309	321	9.2E-53
NCBIfam	TIGR02037	JCVI: Do family serine endopeptidase	IPR011782	Peptidase S1C, Do	28	470	0.0
FunFam	G3DSA:2.40.10.120:FF:000007	Periplasmic serine endoprotease DegP-like	-	-	28	262	2.6E-101
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	264	372	5.8E-27
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	106	118	9.2E-53
CDD	cd00987	PDZ_serine_protease	-	-	269	358	3.55879E-24
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	384	472	5.13E-15
CDD	cd00987	PDZ_serine_protease	-	-	385	470	3.66591E-18
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	386	466	1.9E-10
Gene3D	G3DSA:2.40.10.120	-	-	-	27	262	5.1E-83
SMART	SM00228	pdz_new	IPR001478	PDZ domain	384	463	3.2E-12
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	227	351	4.21E-25
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	271	360	2.2E-16
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	381	474	5.6E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.