Pseudomonas mendocina NBRC 14162, PME1_RS08235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAGGCGCCATAAGGATGCAGGTCGGGCTCCACGCCCTTCCACACGAAGAAGTCGTATTCCAGCGGCGCCGGCAGGCCGTCGAGCAGTTCGAAGCCGGG TGTGCCGGGCACGCAGTGGCTGACCCAGGTCAAGTCGGCATTGACCAGCGGCAGCGCTTGCAGCATCTGCGCGTGGTCCGGCACCACCCAGGCGGCTTGC GGGCTGTGGGCGTCCTTGCTGCCGATGCGCAGTTGAGCGCGCGCTGCCAACTGGTTCAGTGCCGGGACGATGGCGTCGCCCTCGGGGACTGGCAGCTCAT TTGGGCAAAGTGGGGTGAAGCCTTTCTGAGCGTCGACGTCGAAGCTGGCGATCTTCATGGTGCGCCTCCTTACTGCGCTTGGGTGATTACATATTTCATC TGGTGAAATATGTAGTCAAGCGTTTTTACCAATTCTTGCGTGAAAGAAGGCGAATTATTGGTCAAGATGAAATAAGTCCATGACGGAGGCGAATGAAAGG
|
|
| DNA Sequence for Gene |
>PME1_RS08235
ATGAGTGCAGTGGAAGTACTGGCCGGGGTGGATATCGTCGCACTCCGCCTGAGCGAGGAGGGGACGTTGCAGGTGCTGCTGCTGCGTCGCCAGCGCGAGC CCTATATGGGGCAGTGGGCGCTACCAGGCGTGCTGGTCAATGGTCGTTGCGCCGATGCCAGCCTGGATGCCGCCGCCGCTCGTGCCCTGGCGGACAAGGC GCGTCTGCAACCGCAGTACCTGGAACAGGTGACCACGGTGGGCAACGGCGTGCGTGATCCGCGTGGCTGGTCGCTGAGCACCTGCTACCTGGCACTGCTA GCGCCTGACGTCGTGCCGCAGGATGAAAATCTGGAGTTCGTCGAGTTGGCCGCCGTCACTTCCGGGCAGCAGGCATTGCCGTTCGACCACGCGCAACTGG TGCGTCTGGCGGCCGAGCGTCTGCGAGGCAAGTCGGTTTACAGCTCGCTGCCGCTGTATCTGCTGGCGCCGCGCTTTACCGTGACCGAAGCACTTGGGGC CTTCCAGGCCTGCCTGGGCGAGCCGGTACAGCACACCACCTTGCGCGGACGGCTGGAACGGATGAAGACCCAGGGCTGGATCAGCGAGACCGGCGAGAAG AACTACCCGAAGATGGGGCGGCCACAAAATCTTTTGGAGCATCGCCCGCTGGCGGCTGAAGTGTTCGTCTTCGACCGCAACCTGCTGGCCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAACCTTCGTGTACCCGTAGCGACTCAGGGGAATACTGCGGGCAAAAAAATAGGCGCCAGAGGCGCCAGGGGAGCATTTCAATCGATGCATAGGTTCTGA ACCTGCTCTGGCGAGAAAGTTCATTGCGTGATGTAGAAATGCCATCTTTTTTTTGCAGGCAAAAGAAAAGGCGCCAGAGGCGCCTTAAAACGATGATCTA TGGAGTAAGTCGATTACTCAGAGTCGGGGGCCGCAGAAATGGTTCAGAGCACCCCGACGAACGGTCGTCATTTAGCCGGCATCAGCAGCAGGCGCTGGTT GCCATAGACCTTGTCCAGGTTTTCCGACTTGAACGGAAAGCTCATGTAGCCGCCCTTGAGCCATGAGTCGATGCCGTCGGCATAGTGCGGGCTGGCCGGG TTGCCGGACTGGCCTGAGCTATTGACGCCGACCAACGGCTCGTCGGCGGCGAAATCCACCACGATGCGCATCGCCGGGATCAGGAAGGTATTGAAGTCCT
|
|
| Amino Acid Sequence |
>NUDIX hydrolase
MSAVEVLAGVDIVALRLSEEGTLQVLLLRRQREPYMGQWALPGVLVNGRCADASLDAAAARALADKARLQPQYLEQVTTVGNGVRDPRGWSLSTCYLALL APDVVPQDENLEFVELAAVTSGQQALPFDHAQLVRLAAERLRGKSVYSSLPLYLLAPRFTVTEALGAFQACLGEPVQHTTLRGRLERMKTQGWISETGEK NYPKMGRPQNLLEHRPLAAEVFVFDRNLLA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|