Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCCGAAGTGATCTCTGCCGGCGTCATCGATGATCAGGTGCAGAGTCAGGCGGTGACCAAGCATGTGTTGATCGTCGATGACTCTTCGGTGGCGCGTAAGC AGGTTTCGCGCTGCCTGCAAACCGTAGGAGTCGAGGTGACCGCGCTGAATGATGGCCGTGAGGCACTCAATTATCTGAAGAAAATGGCAGACGAGGGGCG CTTCCCCGACAAGGAACTGTTGATGCTGATTTCCGATATCGAGATGCCCGAGATGGACGGATATACACTGACGACTGAGATTCGTAGCGATCCGCGCATG CAGAAGCTGCATATCCTCCTGCATACTTCACTTTCTGGTGTATTCAACCAGGCGATGGTGAAGAAGGTCGGGGCTGACGACTTCCTGGCCAAATTCAAGC CGGATGATCTGGCGGCGCGTGTTGTCGATCGCATTCGTGTATCGGATGGGGGCTGAAGGGGCAACCTTCAGCGAATGTAATGGTAGGTGAGGCGGCACTA
|
|
DNA Sequence for Gene |
>PME1_RS09965
GTGTCTTCAGGTAATTTGGATTTTGAGCAGTTCCGGACTTTCCTGGAAAAGGCCTGCGGTATTCTGCTTGGCAGCAACAAGCAGTACCTGGTTTCCAGCC GTCTGAACAAGCTGATGGAACAGAACGGCATCAAAACCCTGGGCGAGCTGGTGCAGCGCATGCAAAGCCAGCCGCGTGGGGGGCTGCGCGAGCAGGTGGT AGATGCCATGACCACCAACGAGACCTTGTGGTTTCGCGACACCTACCCCTTCGAGGTGCTCAAGAATCGTGTGCTGCCTGAGCTGATCAAGGCCTATCCG GCCCAGCGCCTGCGTATATGGTCCGCGGCCTGCTCTTCCGGCCAGGAGCCGTACTCGCTGTCGATGTCCATCGATGAGTTCGAGCGCAGTAATCTCGGTC AGCTCAAGGCTGGCGTGCAGATCGTTGCCACCGATCTTTCGCCTTCGATGCTGGCCAACTGCAAGTCCGGCGAGTACGACAGCCTTGCCATGGGGCGCGG CCTTTCTCAGGAGCGCCTGCAGCGTTATTTCGACCCCAAGGGGCCGGGACGCTGGCAGGTCAAGGCGCCGGTCAAGAGTCGTGTTGAGTTTCGCCCGCTC AATTTGCTGGACAGCTATGCTGCGTTGGGCAAGTTCGACATCGTGTTCTGCCGAAATGTCCTCATCTATTTTTCGGCTGAGGTGAAGAAGGACATTCTTA CGCGTATCCATGCCACCCTGAAACCGGGCGGCTACCTGTTCCTTGGCGCCTCTGAGGCCCTCAACGGCCTGCCGGACAAATACCAGATGGTGCAGTGCAG CCCTGGGATCATCTACAAGGCGAAGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TGCTAGGCGCGTTCGCAATCAGCAACGGGAGGCCATATGGCCTCCCGTTTGCGTTTCTGAGGTCTGAAAACGGTAGGCGCGCGTGTACACCAGCCGTTTG GCGTGTTGCTTACAGGCCGGCACCCTGCGGTTCGGCGGGGCGGCAATCTGTCCGATTGGCTTTGCCGTTTACTTGCCCGTAGGCGGAAAGGCCTTGCCGC TTTGCCGCTTTTTATCGCTTTGCATGCTCTTAATGCTTTGATTTTATTGGGATAAATAAATTGGCACAGCCTTTGCTGAATAGCTCGCAACAGTGACCAC ATCGCCTCAGCGGCAAAGGTTCAGAATATGAGCATCAACTTCGGCAAAGCACTCGGCATCCATGAACAGGCCCTAGGTTTCCGCGCCCAGCGCGCAGAGG TGCTGTCCAATAACATCGCCAACGCCGATACGCCGAACTACAAGGCGCGCGACCTGGACTTCGCCAGCGTGCTGGCCGAGCAGAATAGTCGCATGCAGCG
|
|
Amino Acid Sequence |
>chemotaxis protein CheR
MSSGNLDFEQFRTFLEKACGILLGSNKQYLVSSRLNKLMEQNGIKTLGELVQRMQSQPRGGLREQVVDAMTTNETLWFRDTYPFEVLKNRVLPELIKAYP AQRLRIWSAACSSGQEPYSLSMSIDEFERSNLGQLKAGVQIVATDLSPSMLANCKSGEYDSLAMGRGLSQERLQRYFDPKGPGRWQVKAPVKSRVEFRPL NLLDSYAALGKFDIVFCRNVLIYFSAEVKKDILTRIHATLKPGGYLFLGASEALNGLPDKYQMVQCSPGIIYKAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|