Pseudomonas mendocina NBRC 14162, PME1_RS13460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGTCCGCTGCTGCGCTGTTCATCCTCTGCGGCCAACTGTACGAGCGCGTGCACACCCGTGACCTGCGCCAGATGGGCGGCATCTGGGCGCGCATGCCC TGGCTGCCGGCCATCAGCCTGTTCTTCGCCGCCGCCGCGCTTGGTCTGCCGGGCACCGGCAACTTCGTCGGTGAATTCCTCATCCTGATCGGCAGCTTCC CCAGCGCGCCCTGGGTCGTGGTGCTGGCCGCCACCGGCCTGGTGCTCGGCTCGGTATACGCCCTGGCGATGATCCACCGCGCCTACTTCGGACCGGTGCA GCAGGAGGCGCCGCTGCCGGGGCTGAAAGCCCGCGAATTGGCCATGGTACTCGGCCTTGGCGTGCTGCTGATTCTGCTTGGCGTTTACCCGCAACCGGTG CTCGATACCTCCGCGGCCAGCATGCATGGCGTGCAGCAGTGGATGGCAGGCGCCCTCGATCAACTCGCCTCGGGCCGGTAAGGGTAAGGATTAGAGACTC
|
|
| DNA Sequence for Gene |
>PME1_RS13460
ATGGAACATCACGCTGTCGAATTCACCCTGCAACACCTGATCGCCCTGCTGCCGCTGCTGGTGACCAGCCTCACTGCCGTCGTGGTGATGCTGGCCATCG CCGCCAAACGCAACCACGCGCTGACCTTCATCCTCTCGGTGATCGGCCTTAACCTGGCACTGCTGTCGCTGATTCCGGCCCTGGAGGTGGCGCCGCTGTC GGTCACCCCGCTGCTGCTGATCGACAACTTCGCCTGCTACTACATGGCCCTGGTGCTGGCCGCCAGCCTGGCCTGCATCACCCTGATCCATGCCTACCTG GGCGGCGCATCGGGCAAGGGCTATCCGGGCAACCGCGAGGAACTGTACCTGCTGGTGCTGCTGTCGGCGGCCGGTGGCCTGGTGCTGGTCAGCGCACAGC ATCTGGCCGGTCTGTTCATCGGCCTGGAACTGTTGTCGGTGCCCACTTACGGGATGATCGCCTACGCCTTCTTCAACAAGCGCTCGCTGGAGGCTGGCAT CAAGTACATGGTGCTGTCGGCCGCAGGCAGCGCCTTCCTGCTGTTCGGCATGGCGCTGCTGTACGCCGAGTCAGGCAACCTGGCCTTCGCAGATATCGGC GCCAGCCTGATGCGCGAAAGCAGCCAGCTGGTGCAGATCGGCATCGGCATGATGCTGATCGGCCTGGCCTTCAAGCTGTCGCTGGTGCCCTTCCACCTGT GGACGCCGGACGTCTACGAAGGCGCCCCGGCGCCGGTGGCGGCCTTCCTGGCTACCGCCAGCAAGGTCGCGGTATTCGCCGTGCTGCTGCGCCTGTACCA GATATCCCCGGCCATGAGCGGCGGCTGGCTGAGCGATCTGCTGACCCTGATCGCCATCGCTTCGATCCTGTTCGGCAACCTGCTGGCCCTGCTGCAGAAC AACCTTAAACGCCTGCTGGGTTACTCCTCCATCGCCCACTTCGGTTATCTGCTGGTGGCGCTGATCGCCAGCAAGGGCCTGGCGGTGGAAGCCGTGGGCG TGTACCTGGCCACCTACGTGCTAACCAGCCTGGGCGCCTTCGGTGTGATCACCCTGATGTCCACGCCGTACAGCGGTCGCGATGCCGATGCGCTGTACGA ATACCGTGGTCTGTTCTGGCGCCGTCCGTACCTGACCGCCGTACTCACGGTGATGATGCTGTCGCTAGCCGGCATTCCGCTGACCGCAGGCTTTATCGGC AAGTTCTACGTGATCGCCGCTGGCGTCGAGGCGCACCTCTGGTGGCTGCTCGGCGCCATGGTGCTGGGCAGTGCCATCGGCGTGTTCTATTACCTGCGAG TGATGGTCACCCTGTTCATGCGCGAGCCCAACCTGCATCGCCACGACGCCCCCTTCGACTGGGGCCAGCGCGCTGGCGGCATCATGCTGCTGGTGGTCGC CCTGCTCGCCTTCTTCCTCGGCGTGTACCCGCAGCCACTGCTGGAACTGGTGCAGCACGCCGGACTAGTCGCACTGGCGCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGAAGCCCCGCAAAGGAAAAGCCCCCGCAGATGCGGGGGCTTTCTTTTAAGGGGCGCGGCTAAAGCCTCTCCCACACAGGTTCATGGTGAATTGTGGGA AGGGCTTTAGCCGTGACAGCGTGTTGCGTTAGCGCCGCGCGACCAGGAACAGCCGTGGAAACGGCAACAACACCCGGCCATCGGCCTGCGCCGGATAGGC CTCGGTGATCGCTGCCTGGTAGCGTTCCAGAAATGCGGCCTGTTGCCCGGCATCCAATGGCTGCAAAAACGGCAGCAGTGCAGTGGACTTGAACCACTCC ACTACCGCAGCAGCATCGTCCAACACATGGAAGTACGTGGTGCGCCAGATATCCAGCTCGCTGGCGTGGGCGCCGAGGATACCGTAGTAGGTCTGCGCGC TGTGCCGCTCGGCATGACGCACCTCGCCGATACGCGCCGCCCACGGGCCGTCAGCGGCTACCTCACGGGCCAGGCGGTGCGCCGGCTCCTGCAGGTTGTC
|
|
| Amino Acid Sequence |
>NADH:ubiquinone oxidoreductase subunit N
MEHHAVEFTLQHLIALLPLLVTSLTAVVVMLAIAAKRNHALTFILSVIGLNLALLSLIPALEVAPLSVTPLLLIDNFACYYMALVLAASLACITLIHAYL GGASGKGYPGNREELYLLVLLSAAGGLVLVSAQHLAGLFIGLELLSVPTYGMIAYAFFNKRSLEAGIKYMVLSAAGSAFLLFGMALLYAESGNLAFADIG ASLMRESSQLVQIGIGMMLIGLAFKLSLVPFHLWTPDVYEGAPAPVAAFLATASKVAVFAVLLRLYQISPAMSGGWLSDLLTLIAIASILFGNLLALLQN NLKRLLGYSSIAHFGYLLVALIASKGLAVEAVGVYLATYVLTSLGAFGVITLMSTPYSGRDADALYEYRGLFWRRPYLTAVLTVMMLSLAGIPLTAGFIG KFYVIAAGVEAHLWWLLGAMVLGSAIGVFYYLRVMVTLFMREPNLHRHDAPFDWGQRAGGIMLLVVALLAFFLGVYPQPLLELVQHAGLVALAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|