Pseudomonas mendocina NBRC 14162, PME1_RS16080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGGTGAAGGCCGTACCGATCAGGCCGAGCTGCAGATCGCTCAGGCTCCATTCAAGGCGAATCGGCTCGATGATGATGGCGGGGATGGTGCGATCGAAGA AGTTGAACAGGTTGGCCAGAAAGAGCAGGAAAAGAATGCGCCAGGCATTCGCGGCTTGCTGATTGGGCTGCACGACAAGGTCTCCCTTTACTGTTGTCCA CATCCGGCCTACTGCAGTGGCGCCTACCTTGGCAGCACTGGTCGAACGTTGGTTGAAGCGCAATCTAGAGCCTTTGCCCAAACATGTCTGCGACCATTCG CTTGGTTTATGCAGGGCAATGACGGCAGATACCAATCTGCCTCATATCCTGAAGGAATAAGGCAAAGTGCTTCTTTCCGTGCTAAACCAATGAAGTTGGT CATTTTCTGGCCAATGCCCCACTGACTCGCTAGGTAGTAAGGAGCACGCCTGTTCTTTCCTGATCAGGCGCTCACACCGCCGCACGGCGGGGGGATGACT
|
|
| DNA Sequence for Gene |
>PME1_RS16080
ATGGAAGGACTCTCGATCCGCTTTCTTGTCGACCTGCCCGAACAGGGACGACTCCTGCTCGATTGCCAACACGATCCCTGGCTCGTGGCCCTCTCGTACG TCATCGCCAGCGTCGGCAGCCTGAGCACGCTGACCATCGCCCGCCACCTGGATCAGGTGCAAAGACGCAGCATGCGTCTGGTCTGGGGGCTGCTTGGCGG GCTGTGTCTGGCGGGTGCGATCTGGTCCATGCATTTCATCGGCATGCTGGCGTTCCAAGCCCCCGTCGCCATTCGCTACGACCTCGCCATCACCATTCTG TCGCTGCTGGTGGCGCTGGCTGCTGCCCTCCTGGCTCTCTACTACATGGCCATGCCGCGTCCCGGCCTGAGCCGCCAGTTGCTGGCGGCCGTGATCATCG GCCTGGGCATCAGCGCCATGCACTACAGCGGCATGGCCGCGATCCGCTCCCCGGCACAGGCTTACTACCACAGCGGCCTGTTTACCCTGTCCATCGCCAT TGCCATCAGCGCCAGCTTCGCCGCGCTGTTGCTCAACCGCTACGTACGCCATGGCTCGCAGAAGCGCCAACGCTGGATGATGGTTTCCGCGGCGCTGGTG ATGGGCGCCGCGATCGCCTCCATGCACTACACCGGCATGGCTGCACTCAATCTGGTGGTGCCGGAAGGCACGCCGCTGCAACTGCGCAGCGCCGACAACA GTGTACAGCTGGTACTGATCGTCGCCTCCATCACCCTGCTCATCCTCAGCCTGAGCCTGGCAGCGGCCTGGATCGGTAGAAAGCTCGATGACAAGGAGCG CGACCTCCAACGGGTCAATACCCTGCTGGTACAGCTCGACCAGGCCAAGGCCTCGCTGGAACAGGTGGCGCATTTCGACCCACTGACCGAGTTGCTTAAC CGCCGTGGATTCAATCGGGTTTTCGCCGCCACGCTGGAAGAACACGCGGTGACCGGGCGCACCCTGGCGGTGATGTTTCTCGATATCGACCACTTCAAGC GCATCAATGACAGCCTTGGCCACGATGCCGGTGACGAGCTACTGCGTGTCGTCGCGCAGCGCATTCGCGCGGCACTGCGTGAACGCGACATCATCGCGCG CTTTGGCGGCGACGAGTTCTGCGTGGTCGCCAGCCTCGACAGCAACGCTGACCCGCGCGGGCTGGCTGCGCGCATGCTCGAACAGATGAAGGAGCCGATC AGCCTGGCCGGCCGCAAGATCGTGATGACCACCAGCGTCGGCATCAGCCTGTTCCCGCAGGACGGCAGCAGCGCCGATGAGTTGCTCAAGCATGCCGACC TGGCGCTCTATCAGTCCAAAGGCAGCGGGCGCAACGTGGTGCATTTCTTCAATCCGTACCTGAAGCAGAAAGCCTCGTTCGAGCTGCAACTGGAAGAAGA TCTGCGCCAAACCCTGCTGCAGGACAACGGCCTGGTTCTCTACTACCAGCCGATCATCGACCTGCGCAGCGGTGCCCTGAGCAAGCTGGAGGCCCTGGTG CGCTGGAATCATCCACAGCACGGTCTGCTCACACCGGAACGCTTCATTGCCATCGCCGAGGCCAACGGCTTCATCGACCAGCTCGACAACTGGGTGCTGC GCCGTGCCTGTCTCGATCTCAACAGCCTGGAACAGATGGGGTATCCGGGGTTGAAGATCGCGGTCAATTGCTCGGCGCTCAACCTCGCCAATGACCAGTT GCCGGGCCGCATCGAACAACTGCTGAACGCGACCCGCTGCCCCGCTCATTGCCTGGAGCTGGAGGTAACCGAAAGCGCGCTGCTGAGCAACATCAACCGC GCGATCGGCCTGCTGGAAAACATCCGCGCGCTGGGGGTGAGCCTGTCCATCGACGATTTCGGCACCGGTTATTCATCCCTCGCCTATCTGCGTCGCTTGC CACTGGATACGCTGAAGGTGGACCGCTCCTTCATACAGGATGTGGCCAACTCCAGTCAGGACCGCGAGATCGTCCATGCCATCATCGCCATGGCTCATGC CCTGCATCTGAAAGTCGTCGCCGAAGGCGTGGAGACCACTGCGCAGCTGGCGTTCCTGCAGGAGCGCGGTTGCGATCAGGTGCAGGGTTACCTGTTCAGC AAACCAGTGCCGCTGGAGGAAATCGTGACCCTCTTTCCGCCACACTTCCGGCCGCTGGAACGGGTGGCGGCAAGGTTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCTTCGCCCCAGAGCAAAGGCTCGCCGCTGAAGCGCCTCCTACAAGCAGCTGTGCAGCCCCTGTGGGAGGGCTTCAGCCGCGACTCAGGCACGTCTCCC ACTCAAGCCCTGAACGCCTGCAACCAGCCCAGACTCGCCTGCGTGCCCGCCTCGCCGGGCTTGTATTCAGCCCCCAGCCAGCCGCTGTAACCGCTGTCAC GTAAAGCACCGAGCAGCGCCGGGAACGCCAACTCGCCCGTACCTGGCGCGCCACGCCCCGGCACGTCGGCGAACTGCACATGACCAATGCGCCCCGCCAG CAGGCGGATGCCGGCAGCCACGTCCAGCCCCTGGCGCGCCATATGGTAGAGGTCGTATTGCGCCGCCAGATTGGGATGATCGACCGCACGCAACAGCTCA TCGAGATGCTCCGGCGTGTTGATCAGAAAACCCGGCATATCGATGGGGTTGATCGCCTCGACCAGCACGCGGATGCCGAGTGCGGCGAATGCCTCGGCAC
|
|
| Amino Acid Sequence |
>diguanylate phosphodiesterase
MEGLSIRFLVDLPEQGRLLLDCQHDPWLVALSYVIASVGSLSTLTIARHLDQVQRRSMRLVWGLLGGLCLAGAIWSMHFIGMLAFQAPVAIRYDLAITIL SLLVALAAALLALYYMAMPRPGLSRQLLAAVIIGLGISAMHYSGMAAIRSPAQAYYHSGLFTLSIAIAISASFAALLLNRYVRHGSQKRQRWMMVSAALV MGAAIASMHYTGMAALNLVVPEGTPLQLRSADNSVQLVLIVASITLLILSLSLAAAWIGRKLDDKERDLQRVNTLLVQLDQAKASLEQVAHFDPLTELLN RRGFNRVFAATLEEHAVTGRTLAVMFLDIDHFKRINDSLGHDAGDELLRVVAQRIRAALRERDIIARFGGDEFCVVASLDSNADPRGLAARMLEQMKEPI SLAGRKIVMTTSVGISLFPQDGSSADELLKHADLALYQSKGSGRNVVHFFNPYLKQKASFELQLEEDLRQTLLQDNGLVLYYQPIIDLRSGALSKLEALV RWNHPQHGLLTPERFIAIAEANGFIDQLDNWVLRRACLDLNSLEQMGYPGLKIAVNCSALNLANDQLPGRIEQLLNATRCPAHCLELEVTESALLSNINR AIGLLENIRALGVSLSIDDFGTGYSSLAYLRRLPLDTLKVDRSFIQDVANSSQDREIVHAIIAMAHALHLKVVAEGVETTAQLAFLQERGCDQVQGYLFS KPVPLEEIVTLFPPHFRPLERVAARF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|