Pseudomonas mendocina NBRC 14162, PME1_RS15305 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCGAGGCCAGCAGCGAAATCAGAATCTCGCCGATGAACATCAGGGCGATGCTATCGCTCAGCGCGCCGAAGATGCCCACTACGCCGCCGAGGATGAA AGTGGCTGCCAGAAGCACCACGTAGAACACCAGGAAGCCACCGATGATGATGCCTTTGGTGCCCTTGACCTTGCTCCAGGACTCGCTCAGCAGGTCGCCA ATGCTGAAGTCGTAACCGCGCGCCAGGGCCTCTTCGACGCTCGGCGCATGGCCCTGAGGCGACTGTTGCAGGTCGCTGGTGGGGGCGGCATAGGGATTGG GGGTGATCGCGTCACTCATGGCTGCGTCCTTGTACAGAGTGGTAGAGGAACGCCAATGCTAATGGTTACAGCATTTTTCTCAAGTGCAGTGCATCCGCTC ATGCGGCGCCTGTGCGCTGGTTCATGCTTTTGCCGGCAGCGGCTGGGCCGGAGGTGAATGATAGACTGGCAGCAATTTTGCCTCGGGTACGGAGCCGCCA
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| DNA Sequence for Gene |
>PME1_RS15305
|sbcB
ATGACTTCCAGCATCTTCTGGTACGACTACGAGACCACCGGTATCAATCCGCGTTGCGATCGTCCGCTGCAGGTGGCGGGCATCCGTACCGACGAGGCGC TCAACGAGATCGGCGAGCCGCTGAACATCTACTGTCGACCCAGCGACGATATCCTGCCGCATCCCGCTGCCTGCCTGGTGACCGGCATCGATCCGCAGCG CCTGCAGCAGCTGGGCCTGGACGAGGGTGAGTTCATGACCCGCGTGCATGCCGCACTGTCGACGCCCGGTACCTGCGGTGCCGGCTACAACAGCCTGCGT TTCGATGACGAGGTGACGCGCTACAGCCTCTATCGCAACTTCTTCGACCCTTACGCGCGCGAATGGCAGGGCGGCAACAGCCGTTGGGACCTGATCGATC TGGTCCGTACGGCCTACGCGTTGAGGCCCGAGGGCATCGAGTGGCCTGAGGAAGACGGGCGTGTATCACTCAAGCTGGAGCGGCTGACCCAGGCCAACGG CATCGATCACGGCCAGGCGCACGATGCGTTATCCGATGTGCGCGCGACCATCGGTCTGGCGCGCCTGCTGCGTGAGCGGCAGCCTCGGCTCTACGACTTC CTCTATCAGCTGCGTAGCAAGCAGCGGGTCATGGATCAGATTCGCCTGCTGCAGCCGATGCTGCACATTTCCGGACGTTTCTCGGCGGCGCGTCACTACC TGGCGCCGGTACTGCCGTTGGCATGGCACCCACGCAATCGCAACGCGCTGATCGTCTGTGACCTGCAAGCTGATCCAACACCCTTGCTGGACCTGGATGC CGAGGTGCTGCGCAGTCGCCTCTACACGCGCCACGAAGACCTCGCCGAGGGCGAGGTGCCGGTGCCTTTGAAGTTACTGCACATCAATCGCTGTCCGGTG GTCGCACCCTTGTCCGTGCTGCGCGACACGGATCGGCAGCGCCTGCAGCTGGACTGGTCGCACTGCGAGCGTAACGTCGAGATGTTGAGGGGTGCGCAGC CGCTGTGGCAGGACAAGTTGATTGATATCTACCGCGAAGAATCCTTCGCCGCCAGCAGCGACCCCGAGCAGCAGCTATACGACGGCTTTATCGGGGATCG TGATCGCCGTTTGTGCGAGCAGGTGCGTAGTGCTCAGCCTCAGTCGCTGGCCAATGACAAATGGCCATTTGATGATGCGCGACTGCCGGAGTTGTTGTTT CGTTATCGCGCGCGCAACTTTCCCGACAGCTTGTCGTCCGACGAAGGGCAGCGCTGGGTGGATTTCTGTCGGCAGCGATTGAGTGATCCGCAGTTCGGCG CTCCCAATACCCTGGCACAGTTTCATGCAGCGCTGGAACAATTGCGTGCTGACTGCAACCCCCAGCAACTACAACTTTTGCAGCAGTGGCGAGCCTATGC AGAGCAACTGCAGGCGCGTTTGGCTGTGGAGGGGAGCTGTGTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGCCGAAAGACGCTCGCACGAGCCGATCGAGCGACTAGGTTTGTCAGTTATTTGTAAGAAAAGTGCAGGCGTTGGGAACTTTCGCTGGCTGCGCATAT TGCGTCAGTCAGCATGAGCATGCCGTTGCAAATCGAGTGCACGCATTGGCTGCGTACGGCATTGCACAAAACTGTTTTTCTGTCGAAGCAGAAAAAGATC GGCAATAAAAAACGCCAGCATGGCTGGCGTTTTGTGGCGTCGCTCTGGAGTTAGCCCAGCAGGGTGGCCCAACCCTCGACGACGTCGGCGCCCCACTTGG CTTTCCACTCTTTCAGCGTCTTGTGGTTGCCGCCTTTGGTTTCGATCACTTCACCGCTGTGCGGGTTCTTGTACTGCTTGACCTTGCGTGCGCGCTTGGT AGCGGCAGGCTTGGCAGCGCGAACGCCTTTGCCGGTTTTGGCTTCCGGGTCGAGCAGAGCAATGATGTCGCGCAGCGACTTCTGATATTCGCCCATCAGG
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| Amino Acid Sequence |
>exonuclease I
MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLVTGIDPQRLQQLGLDEGEFMTRVHAALSTPGTCGAGYNSLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDLVRTAYALRPEGIEWPEEDGRVSLKLERLTQANGIDHGQAHDALSDVRATIGLARLLRERQPRLYDF LYQLRSKQRVMDQIRLLQPMLHISGRFSAARHYLAPVLPLAWHPRNRNALIVCDLQADPTPLLDLDAEVLRSRLYTRHEDLAEGEVPVPLKLLHINRCPV VAPLSVLRDTDRQRLQLDWSHCERNVEMLRGAQPLWQDKLIDIYREESFAASSDPEQQLYDGFIGDRDRRLCEQVRSAQPQSLANDKWPFDDARLPELLF RYRARNFPDSLSSDEGQRWVDFCRQRLSDPQFGAPNTLAQFHAALEQLRADCNPQQLQLLQQWRAYAEQLQARLAVEGSCV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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