Pseudomonas mendocina NBRC 14162, PME1_RS14995

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00674
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00146
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009089 lysine biosynthetic process via diaminopimelate
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00674
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA 3 285 47.276817
CDD cd00950 DHDPS IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA 4 283 7.516E-122
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 287 3.5E-83
SMART SM01130 DHDPS_2 IPR002220 DapA-like 3 287 1.8E-99
PIRSF PIRSF001365 DHDPS IPR002220 DapA-like 1 288 2.2E-77
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 36 57 7.9E-18
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 71 89 7.9E-18
Pfam PF00701 Dihydrodipicolinate synthetase family IPR002220 DapA-like 4 283 1.2E-61
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 103 119 7.9E-18
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 128 145 7.9E-18
NCBIfam TIGR00674 JCVI: 4-hydroxy-tetrahydrodipicolinate synthase IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA 7 285 1.6E-74
PANTHER PTHR12128 DIHYDRODIPICOLINATE SYNTHASE IPR002220 DapA-like 4 283 2.0E-59
SUPERFAMILY SSF51569 Aldolase - - 2 286 7.01E-82

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.