Pseudomonas mendocina NBRC 14162, PME1_RS14365

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 169 452 8.4E-71
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 319 473 2.7E-46
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 328 437 5.8E-29
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 82 318 1.7E-74
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 113 320 3.2E-51
CDD cd18787 SF2_C_DEAD - - 317 445 3.22074E-56
MobiDBLite mobidb-lite consensus disorder prediction - - 1 77 -
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 356 437 5.8E-31
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 118 293 5.2E-48
MobiDBLite mobidb-lite consensus disorder prediction - - 32 46 -
CDD cd00268 DEADc - - 105 306 9.84664E-92
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 93 475 52.487427
MobiDBLite mobidb-lite consensus disorder prediction - - 63 77 -
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 91 476 6.7E-121

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.